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Clc11G16110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G16110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein 6, chloroplastic
Genome locationClcChr11:27078021..27078643
RNA-Seq ExpressionClc11G16110
SyntenyClc11G16110
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591720.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4387.85Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEV-ASISSSA
        MSISTFFG RIS+PPLLNS+ASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEV AS +SSA
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEV-ASISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

XP_008466097.1 PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo]4.2e-4790.57Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+IS+PPLLNS+ASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]8.4e-4891.51Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+IS+PPLLNS+ASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQ
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        AP+TSE
Subjt:  APLTSE

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]2.8e-4387.85Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSIST+FG RIS+PPLLNS+ASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]7.3e-4488.79Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSISTFFG RIS+PPLLNS+ASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein4.1e-4891.51Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+IS+PPLLNS+ASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQ
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        AP+TSE
Subjt:  APLTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic2.0e-4790.57Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+IS+PPLLNS+ASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

A0A5A7TB88 50S ribosomal protein 62.0e-4790.57Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ
        MSISTF GC+IS+PPLLNS+ASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQ
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ

Query:  APLTSE
        APLTSE
Subjt:  APLTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.4e-4387.85Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSIST+FG RIS+PPLLNS+ASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic3.0e-4387.85Show/hide
Query:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA
        MSISTF G RIS+PPLLNS+ASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSA
Subjt:  MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSA

Query:  QAPLTSE
        QAP T+E
Subjt:  QAPLTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic1.7e-1960.24Show/hide
Query:  SISTFFGCRISIPP---LLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV
        S+S+ FGC +S+ P   L N     E   + G L+IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLPPLPPD+T+V
Subjt:  SISTFFGCRISIPP---LLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLV

P82411 50S ribosomal protein 6, chloroplastic3.7e-2249.55Show/hide
Query:  MSISTFFGCR-ISIPPLLNSTA----------SKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN
        MS+S  FG R ++IP +L +++          S    C GG + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLPPLP +WT+VSS   + +
Subjt:  MSISTFFGCR-ISIPPLLNSTA----------SKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDEN

Query:  VEVASISSSAQ
           ++ SSSA+
Subjt:  VEVASISSSAQ

Q9FKP0 50S ribosomal protein 6, chloroplastic1.1e-1851.02Show/hide
Query:  MSISTFFGCRI----SIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFFGCRI----SIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 67.9e-2051.02Show/hide
Query:  MSISTFFGCRI----SIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Subjt:  MSISTFFGCRI----SIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCCACCTTTTTCGGCTGCAGGATTTCGATTCCGCCATTGTTGAATTCAACTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTC
TTCCACCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
AACGAATGTAATCCCATTTGATAGGTCTGTACTGTCTTTCTTACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACCTTTTTCGGCTGCAGGATTTCGATTCCGCCAT
TGTTGAATTCAACTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGG
CCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAA
TGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGCTTACTAGCGAGTAACACTAGTAACTCTTCTATCTGTTCTTTTTCCTGTATTATTTGTATCATCGATGTT
TTAATTGGATTTTGGTTGAGGAAATTGTGTGGCTCTTCAATCTCTGGTTTGTCAATTCTGCTATCTGGAGTTGTTTTCTTTAACGAAATGCATCTCGATTGAGTTGTTAG
AATCAAGAATTGGATGTTGCCTCTAACCTGTTGGTTTGTTGCTCGGAGTAGAACCCTAATACTTTCTGTATTT
Protein sequenceShow/hide protein sequence
MSISTFFGCRISIPPLLNSTASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPLTSE