CuGenDBv2

Gene ID	Clc11G16150
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	ClcChr11:27103359..27106649
RNA-Seq Expression	Clc11G16150
Synteny	Clc11G16150
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136231.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus]

1.6e-65

90.34

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +R  STASGI ASLQPPDVPRLA+TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

7.6e-68

93.1

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA+TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]

2.0e-60

85.52

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGS AL LLKGASS PS   Q FIST+L+SLPVS+IR+RKCSTA GI ASLQPPDVPRLAETARISL P +VEEFAPKIRQVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+DV E FENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

2.0e-60

85.52

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        M S AL LLKGASS PS   Q FIST+L+SLPVSNIR+RKCSTA GI ASLQPPDVPRLAETARISL P++VEEFAPKIRQVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+DV E FENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]

9.3e-66

91.03

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASS PS K + FIST LHSLP S IR+RKCSTAS ILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEP+
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRND+PE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

7.7e-66

90.34

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +R  STASGI ASLQPPDVPRLA+TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGG+QRND+PE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.7e-68

93.1

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA+TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.7e-68

93.1

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA+TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQRNDVPE FENREAMIGAVPVFDEPYIKVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.8e-59

82.31

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Query:  MGSKALPLLKGASSFPSFKRQFFISTA--LHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIE
        MGSKALPLLKGA S PS +RQ FI      H+LP+S+ ++RKCST   I ASLQPPDVPRLAETARISLTPT+VEEFAPKIRQVVDWFGQLQTVDLQSIE
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTA--LHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        PSIRADTEGGNQRND+ E FENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  PSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

9.8e-61

85.52

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGS AL LLKGASS PS   Q FIST+L+SLPVS+IR+RKCSTA GI ASLQPPDVPRLAETARISL P +VEEFAPKIRQVVDWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEGGNQR+DV E FENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.4e-32

69.07

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Query:  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        +L+PPD+PRLA  ARISL+P + EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PE F NR+A+I +VP +D+PYIKVP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.3e-37

61.38

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGS+A+ LLKG S  P     F ++    S   S  R    +TA+G  +SL+PPDV RLAETARISLTP QVEEF PKIRQV+DW   L +VDL S+EPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG N R+D PE FENREA+I AVP +++PY+KVPKVLNKE
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.3e-37

59.59

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRV-RKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEP
        MGS+AL LLK A      K Q          P S +   R+ S  +   +SLQPPDV RLAETARISL   +VEEFAPKIRQV+DWFGQLQ VDL S+EP
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRV-RKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        +IRAD+EG N R+DVPE F  REA+I AVP +++PY+KVPKVLNKE
Subjt:  SIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.8e-41

62.76

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Query:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS
        MGS+AL LLK  ++    +   F S +  S  +     R  ST S +L    PPD+PRLAETARISLTP +VEEFAPKIRQV+DWFGQLQ VDLQSIEPS
Subjt:  MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        IRADTEG N R+D PE FENREA+I A+P ++EPY+KVPKVLNK+
Subjt:  IRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.4e-32

69.07

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Query:  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
        +L+PPD+PRLA  ARISL+P + EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN  R D PE F NR+A+I +VP +D+PYIKVP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

4.2e-32

54.95

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Query:  NIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEP
        N R+ +  ++    + LQPPDV RLA+TARISLTP ++EE   KIR+V+DWFGQLQ VD+ S+EP+IRA+ +GGN R D PE F+NR+++  ++P F++ 
Subjt:  NIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEP

Query:  YIKVPKVLNKE
        Y+KVPK+LNKE
Subjt:  YIKVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCGTCGTTTAAGCGCCAATTCTTCATCTCTACCGCCTTGCATTCCCTACCTGTGTCTAACATCAG
AGTTCGAAAATGTTCAACTGCTTCAGGAATCTTGGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTTGAAG
AATTTGCGCCTAAAATTAGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACTGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGGTGGTAATCAG
CGGAATGACGTTCCTGAACCATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTGAATAAGGAGTAG

mRNA sequence

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Protein sequence

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MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQ
RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE

Clc11G16150 (gene) of Watermelon (cordophanus) v2 genome