; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G16235 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G16235
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTryptophanyl-tRNA synthetase
Genome locationClcChr11:27160497..27161143
RNA-Seq ExpressionClc11G16235
SyntenyClc11G16235
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038626.1 tryptophan--tRNA ligase [Cucumis melo var. makuwa]2.4e-0466.67Show/hide
Query:  VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK
        VKTEA KRGWVA FSLTFSSSH RLLALHLL       QLSS   S    K
Subjt:  VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK
TrEMBL top hitse value%identityAlignment
A0A5A7T8T8 Tryptophanyl-tRNA synthetase1.2e-0466.67Show/hide
Query:  VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK
        VKTEA KRGWVA FSLTFSSSH RLLALHLL       QLSS   S    K
Subjt:  VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCGTGTACGGACCTCATCTGCGAGCTGTGAAGACTGAAGCGCAGAAACGAGGATGGGTCGCTCACTTCTCTCTCACTTTCTCGTCCTCTCACACTCGTCTCCTCGC
TTTACACCTTCTCTGTACGTACTTCTTCCCTTCTCAGCTCTCTTCGTCGCACACATCTACACGCAGTATCAAATGTAGCATCAAAATTTCTGAACTCGGATTCAACTATC
GAGCAGATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTTCAGTTGGAAATAGTTCCCGATGCCTCACCGAACCTGCTG
CGCCAGAGCGTCCTCCCAGTTCCTTCAAGTAATTTCTACTTCTACTGCATTCGTTATATTCGACCTCGAATTTCTTTCTTTTTTATAATACGAAGTATTGGTAGTGGATC
GAGAATTGAATCTACTGTGTTCTTTGAGATTTCATTGTTCGCCAGAGTGTATAAAATTTCAACTCGTTACGGAATTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCGTGTACGGACCTCATCTGCGAGCTGTGAAGACTGAAGCGCAGAAACGAGGATGGGTCGCTCACTTCTCTCTCACTTTCTCGTCCTCTCACACTCGTCTCCTCGC
TTTACACCTTCTCTGTACGTACTTCTTCCCTTCTCAGCTCTCTTCGTCGCACACATCTACACGCAGTATCAAATGTAGCATCAAAATTTCTGAACTCGGATTCAACTATC
GAGCAGATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTTCAGTTGGAAATAGTTCCCGATGCCTCACCGAACCTGCTG
CGCCAGAGCGTCCTCCCAGTTCCTTCAAGTAATTTCTACTTCTACTGCATTCGTTATATTCGACCTCGAATTTCTTTCTTTTTTATAATACGAAGTATTGGTAGTGGATC
GAGAATTGAATCTACTGTGTTCTTTGAGATTTCATTGTTCGCCAGAGTGTATAAAATTTCAACTCGTTACGGAATTTCGTAG
Protein sequenceShow/hide protein sequence
MRVYGPHLRAVKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIKCSIKISELGFNYRADHFLRLEANTPSLIRSFRFIGLQLEIVPDASPNLL
RQSVLPVPSSNFYFYCIRYIRPRISFFFIIRSIGSGSRIESTVFFEISLFARVYKISTRYGIS