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Clc11G16840 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G16840
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein
Genome locationClcChr11:27640116..27642618
RNA-Seq ExpressionClc11G16840
SyntenyClc11G16840
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19240.1 putative transmembrane protein [Cucumis melo var. makuwa]8.7e-4370.55Show/hide
Query:  NKGAGAIHTPQQPILGLRIPAGTIKSTVSDRNSVSSSPEKPHPQRQPLFRDMGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG
        N  A AI++PQQ ILGL +    IK T  DRNS+SSSPEK HP+RQ LF                   ALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG
Subjt:  NKGAGAIHTPQQPILGLRIPAGTIKSTVSDRNSVSSSPEKPHPQRQPLFRDMGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG

Query:  TTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        TTGTMLDIIMGISACEREHAERQMKLLEEAQNSA ++S+NDS SHS
Subjt:  TTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

XP_004142617.1 uncharacterized protein LOC101216487 [Cucumis sativus]3.4e-3993.68Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKHIE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA+EA +NDS S S
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

XP_008444129.1 PREDICTED: uncharacterized protein LOC103487570 isoform X2 [Cucumis melo]5.3e-4093.68Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKHIE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA ++S+NDS SHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

XP_023525801.1 uncharacterized protein LOC111789310 [Cucurbita pepo subsp. pepo]3.4e-3992.63Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKH+EECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA E S+ +S+SHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

XP_038899123.1 uncharacterized protein LOC120086511 [Benincasa hispida]7.4e-4297.89Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA+EAS+NDSESHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

TrEMBL top hitse value%identityAlignment
A0A0A0L1X1 Uncharacterized protein1.7e-3993.68Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKHIE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA+EA +NDS S S
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

A0A1S3B9M1 uncharacterized protein LOC103487570 isoform X22.6e-4093.68Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKHIE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA ++S+NDS SHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

A0A5D3D6Z5 Putative transmembrane protein4.2e-4370.55Show/hide
Query:  NKGAGAIHTPQQPILGLRIPAGTIKSTVSDRNSVSSSPEKPHPQRQPLFRDMGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG
        N  A AI++PQQ ILGL +    IK T  DRNS+SSSPEK HP+RQ LF                   ALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG
Subjt:  NKGAGAIHTPQQPILGLRIPAGTIKSTVSDRNSVSSSPEKPHPQRQPLFRDMGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFG

Query:  TTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        TTGTMLDIIMGISACEREHAERQMKLLEEAQNSA ++S+NDS SHS
Subjt:  TTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

A0A6J1C9Z5 uncharacterized protein LOC1110097372.4e-3892.63Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGS ENVKH+EECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLL EAQNSA++AS+ DSESHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

A0A6J1FMK1 uncharacterized protein LOC1114467691.4e-3891.58Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQE VKH+EECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSA E S+ +S SHS
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21930.1 unknown protein3.2e-3574.74Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS
        MGSQENVKH+EEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREHAE QMKLL+++QN+ +  +  ++E  S
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSESHS

AT3G42150.1 unknown protein4.6e-3473.12Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES
        MGSQ+NVKH+EEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREHAE Q KLL+++QN+ +  +  ++E+
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES

AT3G42150.2 unknown protein4.6e-3473.12Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES
        MGSQ+NVKH+EEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREHAE Q KLL+++QN+ +  +  ++E+
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES

AT3G42150.3 unknown protein4.6e-3473.12Show/hide
Query:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES
        MGSQ+NVKH+EEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREHAE Q KLL+++QN+ +  +  ++E+
Subjt:  MGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEEAQNSASEASINDSES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACAAAGGGGCCGGGGCCATCCATACTCCACAGCAACCCATTTTAGGGCTCAGGATTCCAGCGGGAACCATAAAATCCACCGTTTCAGATCGTAATTCTGTAAG
TTCTTCGCCGGAGAAGCCTCATCCCCAACGTCAACCACTGTTTCGAGACATGGGAAGCCAAGAAAATGTTAAGCATATTGAGGAGTGCTCAGTTTCAAATGCGTTGGGCA
CTTGGGTATTCTCAGTAGCAGGAGCCTTGCTAGCGATTCCAGTGGGAATAAAGAGAAAGTCACTGGCACCCCTTGTATTTTTTGGCACCACTGGTACAATGCTTGACATT
ATAATGGGAATTAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGAAGCTCAAAACTCTGCATCAGAAGCTTCAATTAACGATTCCGAATCCCA
TTCTTGA
mRNA sequenceShow/hide mRNA sequence
GCAGTTCTCAACTCGCCATAGATGGGAAACAAAGGGGCCGGGGCCATCCATACTCCACAGCAACCCATTTTAGGGCTCAGGATTCCAGCGGGAACCATAAAATCCACCGT
TTCAGATCGTAATTCTGTAAGTTCTTCGCCGGAGAAGCCTCATCCCCAACGTCAACCACTGTTTCGAGACATGGGAAGCCAAGAAAATGTTAAGCATATTGAGGAGTGCT
CAGTTTCAAATGCGTTGGGCACTTGGGTATTCTCAGTAGCAGGAGCCTTGCTAGCGATTCCAGTGGGAATAAAGAGAAAGTCACTGGCACCCCTTGTATTTTTTGGCACC
ACTGGTACAATGCTTGACATTATAATGGGAATTAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGAAGCTCAAAACTCTGCATCAGAAGCTTC
AATTAACGATTCCGAATCCCATTCTTGATATCATCCTTGCATGGTTGTATCACTCACTCGTCGTGCCAAACAACCTTTTCATCCTCAGCTGTGTTTGATGATGAATACCT
TTTTGGCATGGCCCTTAGCTGGGATTGTTCAGCCTTCTTTCAAACCACAGGGACATTGCTTGAGTTGTGGTATTGCGCAATCAACTGCCTTGACTTTATTGATTTGCAAT
AAAATTGTACCTGTAACCATAATTCTCATGTGCATTATGCTTTTGTAGACAACTTTGGGAAAATAGTTTCGTTATCCCCCTTAATTAATTCACAGTTTCAGAA
Protein sequenceShow/hide protein sequence
MGNKGAGAIHTPQQPILGLRIPAGTIKSTVSDRNSVSSSPEKPHPQRQPLFRDMGSQENVKHIEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDI
IMGISACEREHAERQMKLLEEAQNSASEASINDSESHS