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Clc11G17410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G17410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNDR1/HIN1-like protein 12
Genome locationClcChr11:28186663..28187268
RNA-Seq ExpressionClc11G17410
SyntenyClc11G17410
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006898 - receptor-mediated endocytosis (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030124 - AP-4 adaptor complex (cellular component)
GO:0140312 - cargo adaptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052257.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]2.1e-10092.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNA+AHASFS+TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPL+F CRLNCHLRF P NGSYIP PCSSNQ
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

KGN53998.2 hypothetical protein Csa_011831 [Cucumis sativus]2.3e-9991.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+RIRSSRTGLLEVQMKIVVRAENQNA+AHA FS+TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKM+YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPL+F CRL+CHLRF+P NGSYIP+PCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

XP_022135525.1 uncharacterized protein LOC111007456 [Momordica charantia]1.5e-9890.55Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNA+AHASFSQTDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVA RPFKV+KMSYLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPL+F CRLNCHLRF+P NGSY+P+PCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

XP_022940744.1 uncharacterized protein LOC111446247 [Cucurbita moschata]3.9e-10293.53Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFS TDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPL+F CRLNCHLRFYP NGSYIP+PCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

XP_038896622.1 uncharacterized protein LOC120084885 [Benincasa hispida]4.1e-10495.02Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSS+KRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDL+GSSRTRWRVG+LGPL+F CRLNCHLRFYP NGSYIP+PCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0L1I9 Uncharacterized protein1.1e-9991.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+RIRSSRTGLLEVQMKIVVRAENQNA+AHA FS+TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKM+YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDL+GSSRTRWRVGVLGPL+F CRL+CHLRF+P NGSYIP+PCSS Q
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

A0A5D3BSN8 NDR1/HIN1-like protein 121.0e-10092.04Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNA+AHASFS+TDFVLLF
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDL+GSSRTRWRVG+LGPL+F CRLNCHLRF P NGSYIP PCSSNQ
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1C199 uncharacterized protein LOC1110074567.3e-9990.55Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPP FLSSLKRHTHPLIWIAGIICA IALAVII GIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNA+AHASFSQTDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVA RPFKV+KMSYLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDL+GSSRTRWRVGVLGPL+F CRLNCHLRF+P NGSY+P+PCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1FEV3 uncharacterized protein LOC1114434375.3e-9789.55Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VPSISVTDGHLDRIR+SR GLLEVQMKIVVRAENQNARA ASFS TDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNP QMQHLSWSL R+LMQFDL+GSSRTRWRVGVLGPL+F C LNC LRFYP NGSYIP+PCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

A0A6J1FL61 uncharacterized protein LOC1114462471.9e-10293.53Show/hide
Query:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF
        MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFS TDFVL+F
Subjt:  MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLF

Query:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ
        +GIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDL+GSSRTRWRVGVLGPL+F CRLNCHLRFYP NGSYIP+PCSS  
Subjt:  EGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQ

Query:  K
        K
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13050.1 unknown protein4.5e-0825.43Show/hide
Query:  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLVA
        + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV   N + ++   FS   F L F    IA+   
Subjt:  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLVA

Query:  H-RPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHL
        H  PF V K   +   F + SS + +   Q Q L   L    +  +LRG+   R  +G L    +     C +
Subjt:  H-RPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHL

AT1G13050.2 unknown protein5.0e-0725.61Show/hide
Query:  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLVAH-RPFKVNK
        A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV   N + ++   FS   F L F    IA+   H  PF V K
Subjt:  AGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLVAH-RPFKVNK

Query:  MSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHL
           +   F + SS + +   Q Q L   L    +  +LRG+   R  +G L    +     C +
Subjt:  MSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHL

AT5G45320.1 FUNCTIONS IN: molecular_function unknown6.7e-5252.6Show/hide
Query:  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLV
        RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+L+ Q+ IV+R EN NA+AHA F +T+F L +EG  IA L 
Subjt:  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLV

Query:  AHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQK
        A   F+V K   + L +LV+S  IPLNPT MQ + +++K+D++ F+L+G SRTRWRVG LG ++F C L+C LRF P + SYIPSPC+S  K
Subjt:  AHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCGAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATCATCGCAGGCATCGT
CATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTGCCTTCAATTAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAGTCCAGA
TGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACAGACCGATTTCGTCTTGCTTTTCGAAGGCATAGAAATCGCATCACTGGTGGCT
CACCGGCCGTTCAAAGTGAACAAAATGAGTTACTTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCGCTCAATCCAACGCAGATGCAGCATCTAAGCTGGTCGCT
GAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTCTTAGGACCGCTCAGGTTTCGGTGCCGTTTGAACTGCCATCTCCGGT
TTTACCCGCACAATGGAAGCTACATTCCCTCGCCTTGTTCTTCAAATCAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCGAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATTGCCGGCATAATCTGCGCCGCCATAGCTCTTGCAGTGATCATCGCAGGCATCGT
CATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTGCCTTCAATTAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACTGGATTGCTTGAAGTCCAGA
TGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACAGACCGATTTCGTCTTGCTTTTCGAAGGCATAGAAATCGCATCACTGGTGGCT
CACCGGCCGTTCAAAGTGAACAAAATGAGTTACTTGGATTTGCATTTCTTAGTGGAATCGTCGGCGATTCCGCTCAATCCAACGCAGATGCAGCATCTAAGCTGGTCGCT
GAAGAGGGATTTGATGCAATTCGATCTGAGAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTCTTAGGACCGCTCAGGTTTCGGTGCCGTTTGAACTGCCATCTCCGGT
TTTACCCGCACAATGGAAGCTACATTCCCTCGCCTTGTTCTTCAAATCAGAAGTAA
Protein sequenceShow/hide protein sequence
MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFEGIEIASLVA
HRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLRGSSRTRWRVGVLGPLRFRCRLNCHLRFYPHNGSYIPSPCSSNQK