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Clc11G17560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G17560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationClcChr11:28289974..28294356
RNA-Seq ExpressionClc11G17560
SyntenyClc11G17560
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4277098.1 unnamed protein product [Prunus armeniaca]9.0e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

NP_001295724.1 photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]4.0e-5382.01Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MATSV+A S++LKPS F+VQ+     +P L+R   +F+VEA GGKKIKTDKPYGIGGGMNLRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYNTDEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SPTGDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSALA
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

VVA34501.1 PREDICTED: photosystem II [Prunus dulcis]9.0e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

XP_007212214.1 photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica]9.0e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]5.3e-6189.66Show/hide
Query:  MATSVI-ASSLTLKPSNFAVQRCRRDL-----IPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
        MA SV+ ASSL+LKPSNFAVQR   DL     IPSLARTSSSF+VEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
Subjt:  MATSVI-ASSLTLKPSNFAVQRCRRDL-----IPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI

Query:  YNTDEWSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        YNTDEWSPTGDVYA G TGLAIWAVTLLGLLAGGALLVYNTSALA
Subjt:  YNTDEWSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

TrEMBL top hitse value%identityAlignment
A0A5E4G3Z3 Photosystem II 10 kDa polypeptide, chloroplastic4.4e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

A0A6J5USX5 Photosystem II 10 kDa polypeptide, chloroplastic4.4e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

D6BRD6 Photosystem II 10 kDa polypeptide, chloroplastic2.0e-5382.01Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MATSV+A S++LKPS F+VQ+     +P L+R   +F+VEA GGKKIKTDKPYGIGGGMNLRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYNTDEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SPTGDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSALA
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

I3SHR8 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5279.14Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA+SV+A S++LKP+ F++++     +PSL+R+S+SFRV ASGGKKIKTD PYG GGGMNLRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIY+T +W
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SPTGDVYAGG TGLAIWAVTLLGLLAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

M5WVP2 Photosystem II 10 kDa polypeptide, chloroplastic4.4e-5379.86Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMNL++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        SP+GDVYAGG TGLAIWAVTLLG+LAGGALLVYNTSAL+
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-5277.21Show/hide
Query:  SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPT
        S + SSL+LKP+ F +++     +PSLAR+SSSF+V ASG KK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWSP+
Subjt:  SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPT

Query:  GDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        GDVY GG TGLAIWAVTL+G+LAGGALLVYNTSALA
Subjt:  GDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

P10690 Photosystem II 10 kDa polypeptide, chloroplastic1.4e-5177.14Show/hide
Query:  MATSVIASSLTLKPSNFAVQ-RCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MATSV+ SSL+LKPS+F V  +     +PSL+R+S+SF V ASG KKIK DKP GIGGGM LR+GVD+SGRKPTGKGVYQ+VDKYGANVDGYSPIYN +E
Subjt:  MATSVIASSLTLKPSNFAVQ-RCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        W+PTGDVYAGG TGL IWAVTL GLLAGGALLVYNTSALA
Subjt:  WSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

P49108 Photosystem II 10 kDa polypeptide, chloroplastic2.8e-4972.14Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTS-SSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MA SV+ SS+TLKP+ F V++     +PSL R S SSFR+ ASG KKIKTDKP+G+ G M+LR+GVDASGRK  G GVY++VDKYGANVDGYSPIYN DE
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTS-SSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        WS +GDVY GG+TGLAIWAVTL G+LAGGALLVYNTSALA
Subjt:  WSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.6e-5277.21Show/hide
Query:  SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPT
        S + SSL+LKP+ F +++     +PSL R+SSSF+V ASG KK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWSP+
Subjt:  SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPT

Query:  GDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        GDVY GG TGLAIWAVTLLG+LAGGALLVYNTSALA
Subjt:  GDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic5.1e-5176.15Show/hide
Query:  LTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAG
        ++LKP+ F+V++     +PSLAR+SSSFRV+ASG KK+KTDKPYGI G M+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYNTD+WSP+GDVY G
Subjt:  LTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAG

Query:  GITGLAIWAVTLLGLLAGGALLVYNTSALA
        G TGLAIWAVTL+G+LAGGALLV+NTSALA
Subjt:  GITGLAIWAVTLLGLLAGGALLVYNTSALA

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R2.6e-5071.22Show/hide
Query:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW
        MA SV+ SS+TLKP+ F V++     +PSL R   SF++ ASG KKIKTDKP+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EW
Subjt:  MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEW

Query:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA
        S +GDVY GG+TGLAIWAVTL G+LAGGALLVYNTSALA
Subjt:  SPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATGCCGCCGTGATCTAATTCCTTCACTTGCAAGGACTTCTTCTTCCTT
CAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGACGG
GCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGT
ATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCACTTAGCGAGACCGAAGGACTT
CAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGAGATCGGAAGCAAAGAAGCCAGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCG
GAATTGTTTGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATGCCGCCGTGATCTAATTCCTTCACTTGCAAGGACTTCTTCTTCCTT
CAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGACGG
GCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGT
ATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCACTTAGCGAGACCGAAGGACTT
CAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGAGATCGGAAGCAAAGAAGCCAGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCG
GAATTGTTTGCTTCTAA
Protein sequenceShow/hide protein sequence
MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGG
ITGLAIWAVTLLGLLAGGALLVYNTSALAHLARPKDFNDFKDDPKRCLQRSEAKKPVLTVFITSSSRLTNEKGGIVCF