; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G17620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G17620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationClcChr11:28343228..28350993
RNA-Seq ExpressionClc11G17620
SyntenyClc11G17620
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144641.1 uncharacterized protein LOC101218072 [Cucumis sativus]9.1e-6590.85Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSA  DSNVSAELETSI+ NGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPDTRSS +SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

XP_008444284.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo]3.7e-6692.81Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MH PEKLD DYSA  DSNVSAELETSISP GDLQEGNDGENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLPDTRSS NSSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

XP_038897515.1 uncharacterized protein LOC120085558 isoform X1 [Benincasa hispida]1.3e-6393.75Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLP+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]4.5e-6494.44Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

XP_038897521.1 uncharacterized protein LOC120085558 isoform X5 [Benincasa hispida]4.5e-6494.44Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDGDYSA  +SNV +ELETSISPNGDLQEGND ENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPD

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 71.8e-6692.81Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MH PEKLD DYSA  DSNVSAELETSISP GDLQEGNDGENKN+GNSNALANGLSSMLINIIRDFDSKADDTL SQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAI+MGNLPDTRSS NSSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 72.8e-5178.75Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLT-------TELDQL
        MHSPEK+  D  A  DS+VS ELETSIS NGDL+E ND  N N+ NSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDR+T       TELDQL
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLT-------TELDQL

Query:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        LE APFPFIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN PDT SSQ+SSQ
Subjt:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 72.3e-5382.35Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+  D  A  DS+VS ELETSIS NGDL+E ND  N N+ NSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAISMGN PDT SSQ+SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 72.3e-5380.39Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHS EK+  D SA  DS VSAELE SISPNGD++E ND  N N+G+SNALANGLSSML+NI+RDFDSKADDTL SQSQLS SLDRLT+ELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR ISM NLPD RSSQ+SSQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 72.3e-5381.7Show/hide
Query:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+  D  A  DS+ S ELETSIS NG+L+E ND  N N+ NSNALANGLSSMLINIIRDFDSKADDTL SQSQLSSSLDR+TTELDQLLEDAPFP
Subjt:  MHSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAISMGN PDT SSQ+ SQ
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related1.2e-2751.09Show/hide
Query:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRK
        +D   SA+  TS   +   ++G  G     G   A+A GLS+ML ++I+DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V++
Subjt:  ADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRK

Query:  RVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNS
        RV SLN +L+++QRR+DNID  +S     +  SS+ +
Subjt:  RVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCCTCAACGCCTCCTATCTTCAGCGCATACCACGACCAACTACACTACTGCCTTCAACGCATAGAAGCCACAGCTCATGACAATCTTACCAACACATGGGTCGG
ACGGTGTGCCCCTTCCCATGGGTTGAAGGTTCTATATAGTACTCGATATGCCATTTTGGCTCGGCATCGACTGGGCATGGACATAGGAGGATTCATGCCTAGATATTACC
CAGTTGACACGACATTTACCCGAGTTAACTCGGTAAGCATTATGATATCTTGGAAAGCCCCGAATTACGGAGGTTGTGTTGTTGAGGATCACAATGACGAAGAGAGTTGC
AAAGGAGGGAAGTCGAAGAGAGTCGTGAAGGAGGGAAGTCGCACGTACAAGGGACGGGTGGGGCCGAATGAAGTCATTAGGTTAGTTCGGTTAAGGAAAGAAGAACCTTG
CCTAAGGTGTGTTGCCGAATTTAGATTTAGGGAAAACTCAAGCGTTGGGTCGCCGGACTGTTCGCATCGCTCGCCGGAAGTCGAGAATCCGTGGGTGTCGGATTTTCTGT
GCCGTGTGGTTCACCGGAAGCTGCCACGCGTGATTCGCCGGGGGGAGTCCGTTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCGGTGAGAATTTGGCTGAGATG
CACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACCGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGA
TGGTGAAAATAAGAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCAAAGCTGATGATACTCTTACAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTACAGAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAAC
GTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGATACTCGTTCCTC
TCAAAATTCCTCCCAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCCTCAACGCCTCCTATCTTCAGCGCATACCACGACCAACTACACTACTGCCTTCAACGCATAGAAGCCACAGCTCATGACAATCTTACCAACACATGGGTCGG
ACGGTGTGCCCCTTCCCATGGGTTGAAGGTTCTATATAGTACTCGATATGCCATTTTGGCTCGGCATCGACTGGGCATGGACATAGGAGGATTCATGCCTAGATATTACC
CAGTTGACACGACATTTACCCGAGTTAACTCGGTAAGCATTATGATATCTTGGAAAGCCCCGAATTACGGAGGTTGTGTTGTTGAGGATCACAATGACGAAGAGAGTTGC
AAAGGAGGGAAGTCGAAGAGAGTCGTGAAGGAGGGAAGTCGCACGTACAAGGGACGGGTGGGGCCGAATGAAGTCATTAGGTTAGTTCGGTTAAGGAAAGAAGAACCTTG
CCTAAGGTGTGTTGCCGAATTTAGATTTAGGGAAAACTCAAGCGTTGGGTCGCCGGACTGTTCGCATCGCTCGCCGGAAGTCGAGAATCCGTGGGTGTCGGATTTTCTGT
GCCGTGTGGTTCACCGGAAGCTGCCACGCGTGATTCGCCGGGGGGAGTCCGTTCGCCGGGCGTTGCTGAGTTGTGGAGCTCGCTGGAGCGGTGAGAATTTGGCTGAGATG
CACAGTCCGGAGAAATTGGATGGCGATTATTCTGCCACCGCGGACAGCAACGTCTCGGCTGAATTGGAGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGA
TGGTGAAAATAAGAACATAGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTCGACTCCAAAGCTGATGATACTCTTACAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCGTCTTACTACAGAATTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAAC
GTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAGCGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGATACTCGTTCCTC
TCAAAATTCCTCCCAGCTTTAA
Protein sequenceShow/hide protein sequence
MAPSTPPIFSAYHDQLHYCLQRIEATAHDNLTNTWVGRCAPSHGLKVLYSTRYAILARHRLGMDIGGFMPRYYPVDTTFTRVNSVSIMISWKAPNYGGCVVEDHNDEESC
KGGKSKRVVKEGSRTYKGRVGPNEVIRLVRLRKEEPCLRCVAEFRFRENSSVGSPDCSHRSPEVENPWVSDFLCRVVHRKLPRVIRRGESVRRALLSCGARWSGENLAEM
HSPEKLDGDYSATADSNVSAELETSISPNGDLQEGNDGENKNIGNSNALANGLSSMLINIIRDFDSKADDTLTSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISN
VRKRVLSLNSILRTIQRRVDNIDRAISMGNLPDTRSSQNSSQL