; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G17680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G17680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAuxin-responsive family protein
Genome locationClcChr11:28406357..28407028
RNA-Seq ExpressionClc11G17680
SyntenyClc11G17680
Gene Ontology termsGO:0009733 - response to auxin (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024703.1 hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5676.73Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFD-----NIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALID
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVCER +EE E+ +       H++++  E+VSG+NVI+YVGSTRKRY ISSKYL+HPLLNALID
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFD-----NIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALID

Query:  KSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        KSK  K    NED+DDD  CISVRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Subjt:  KSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

XP_008444291.1 PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]6.4e-5779.5Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSG-NNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVCE+   +EEDF     +QQ  +KVSG NNV+LYVGSTRK+YAI+SKYL HPLLNALIDKSKS
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSG-NNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS

Query:  KKLANDNEDE------DDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        KKL +D++DE       DD+DCI VRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Subjt:  KKLANDNEDE------DDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

XP_011653970.1 auxin-responsive protein SAUR78 [Cucumis sativus]1.5e-5880.38Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVCE+   +EEDF     +QQ  +KVSG+NVILYVGSTRK+YAI+SKYL+HPLLNALIDKSKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK

Query:  KLANDNEDED----DDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        KL +D++D+D    DD++CI VRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Subjt:  KLANDNEDED----DDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

XP_023536060.1 auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]2.5e-5677.56Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQ--LEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSK
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVC+R +EE E+ +   ++++    EKVSG+NVI+YVGSTRKRYAISSKYL+HPLLNALIDKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQ--LEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSK

Query:  SKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
          K      +EDDDD+CISVRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Subjt:  SKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

XP_038899559.1 auxin-responsive protein SAUR78 [Benincasa hispida]2.1e-6085.06Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK
        MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVC  K+ EEEDF+   QQ+QQLEKVSGN+VILYVGSTRKRYAISSKYL+HPLLNALIDKSKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK

Query:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        KL  +  D+D+++DCISVRCEVVLFDHLLWMLENSDPNI+FDSNLEELAELYVF
Subjt:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

TrEMBL top hitse value%identityAlignment
A0A1S3B9J9 uncharacterized protein LOC1034876593.1e-5779.5Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSG-NNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+WVCE+   +EEDF     +QQ  +KVSG NNV+LYVGSTRK+YAI+SKYL HPLLNALIDKSKS
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSG-NNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS

Query:  KKLANDNEDE------DDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        KKL +D++DE       DD+DCI VRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Subjt:  KKLANDNEDE------DDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

A0A6J1C0S4 uncharacterized protein LOC1110073981.5e-5477.42Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVW-VCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTRED+W +C  K+EEEE+ +  H QQQQLEKV G+NVI+YVGSTRK+Y ISSK+L+HPL+NALIDKSKS
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVW-VCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKS

Query:  KKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        K     ++ + +D + ISVRCEVVLFDHLLWMLENSDPNITFDSNLEELA+LYVF
Subjt:  KKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

B9RI47 Uncharacterized protein3.0e-3662.34Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK
        MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE++W  + K E+EE     HQ              L+VGSTRKRY ISSKYL+HPL+NALI KSK +
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK

Query:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        +           ++ + V+CEVVLFDHLLWMLEN+DPN++FDS LEELAELYVF
Subjt:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

M5WKH8 Uncharacterized protein1.2e-3561.29Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK
        MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTRED+WV     ++  + D+ H Q            I++VGSTRKRY ISSKYL HPLLNALIDKS  +
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK

Query:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLEN-SDPNITFDSNLEELAELYVF
        K   + ED       I V CEVVLFDHL+WMLEN +DP+     +LEELA LYVF
Subjt:  KLANDNEDEDDDDDCISVRCEVVLFDHLLWMLEN-SDPNITFDSNLEELAELYVF

W9S1R7 Uncharacterized protein5.2e-3655.97Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK
        MKKINS+LRKCKSLSRQL RSSSYS+LRSKS+R+D WV           D+  QQQ QL++    +  ++VGS +KRY IS+K+L+HPLL ALIDKS+ K
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSK

Query:  KLANDNEDEDD-----DDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
          + DN +  D     +++ + V+CEVVLFDHLLWMLEN+DP      +LEELA LYVF
Subjt:  KLANDNEDEDD-----DDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

SwissProt top hitse value%identityAlignment
Q29PU2 Auxin-responsive protein SAUR764.7e-1042.86Show/hide
Query:  LYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELY
        +YVG TR+ Y +SS  ++HPL          ++LA  +     +D  ISV CEVVLF+HLLWMLEN+D + +   ++ EL E Y
Subjt:  LYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELY

Q9C9E1 Auxin-responsive protein SAUR781.1e-1140.66Show/hide
Query:  NNV-ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        NN+ ++YVG TR+ Y +    ++HPL   L+D+S S+ +  D E        I V CEVVLF+HLLWML++         ++EELAE Y +
Subjt:  NNV-ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

Q9LQI6 Auxin-responsive protein SAUR777.3e-1141.3Show/hide
Query:  ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELAELYVF
        ++YVG +R+ Y +SS  + HPL   L+D+S S+ +     +E  D + + V CEVVLF+HLLWML+NS     D +     ++EELAE Y +
Subjt:  ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELAELYVF

Arabidopsis top hitse value%identityAlignment
AT1G17345.1 SAUR-like auxin-responsive protein family5.2e-1241.3Show/hide
Query:  ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELAELYVF
        ++YVG +R+ Y +SS  + HPL   L+D+S S+ +     +E  D + + V CEVVLF+HLLWML+NS     D +     ++EELAE Y +
Subjt:  ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELAELYVF

AT1G72430.1 SAUR-like auxin-responsive protein family8.0e-1340.66Show/hide
Query:  NNV-ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
        NN+ ++YVG TR+ Y +    ++HPL   L+D+S S+ +  D E        I V CEVVLF+HLLWML++         ++EELAE Y +
Subjt:  NNV-ILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF

AT3G12955.1 SAUR-like auxin-responsive protein family9.4e-2242.76Show/hide
Query:  KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKL
        ++  +LR+CKS+S QLGRS SY+SLRSKS R D                 H Q             + VG T+K Y IS K+L HPLLNAL++K +  + 
Subjt:  KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKL

Query:  ANDNEDEDDDDDC-ISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYV
            ED+++D  C I+V+CEVVLFDHLLWMLE  D  +    +L++ A LY+
Subjt:  ANDNEDEDDDDDC-ISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYV

AT5G20810.1 SAUR-like auxin-responsive protein family3.0e-0428.57Show/hide
Query:  QQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSN
        Q  +    V   N+ +YVG   +R+ I + YL+H L   L++K+       + E   D    +++ CEV  F +LL  +EN+  ++  D N
Subjt:  QQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSN

AT5G20820.1 SAUR-like auxin-responsive protein family3.3e-1142.86Show/hide
Query:  LYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELY
        +YVG TR+ Y +SS  ++HPL          ++LA  +     +D  ISV CEVVLF+HLLWMLEN+D + +   ++ EL E Y
Subjt:  LYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDEDDDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGATAAATTCTCTATTGAGGAAATGCAAGAGCCTTTCAAGGCAACTGGGGAGATCCTCTTCTTATAGCAGCTTGAGATCAAAATCCACAAGGGAAGATGTTTG
GGTTTGTGAAAGAAAATTAGAAGAAGAAGAAGATTTTGATAATATTCATCAACAGCAGCAGCAACTTGAAAAGGTGAGTGGCAATAATGTAATTTTATATGTTGGGAGCA
CAAGGAAGAGATATGCAATAAGTTCAAAATATTTGACCCATCCTTTGCTAAATGCTCTTATTGACAAATCAAAGTCTAAGAAATTAGCTAATGATAATGAAGATGAAGAT
GATGATGATGATTGCATTTCAGTGAGATGTGAAGTTGTTCTATTTGACCATCTTTTGTGGATGTTGGAAAATTCTGATCCAAACATTACTTTTGATTCTAATTTGGAGGA
ATTGGCTGAGCTTTATGTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAAAAAGAAAATGAAGAAGATAAATTCTCTATTGAGGAAATGCAAGAGCCTTTCAAGGCAACTGGGGAGATCCTCTTCTTATAGCAGCTTGAGATCAA
AATCCACAAGGGAAGATGTTTGGGTTTGTGAAAGAAAATTAGAAGAAGAAGAAGATTTTGATAATATTCATCAACAGCAGCAGCAACTTGAAAAGGTGAGTGGCAATAAT
GTAATTTTATATGTTGGGAGCACAAGGAAGAGATATGCAATAAGTTCAAAATATTTGACCCATCCTTTGCTAAATGCTCTTATTGACAAATCAAAGTCTAAGAAATTAGC
TAATGATAATGAAGATGAAGATGATGATGATGATTGCATTTCAGTGAGATGTGAAGTTGTTCTATTTGACCATCTTTTGTGGATGTTGGAAAATTCTGATCCAAACATTA
CTTTTGATTCTAATTTGGAGGAATTGGCTGAGCTTTATGTTTTTTGAATTTCATGTATGGAAATTAGTGGGAGTCGGAGAGAGTCGTTACGTATCAAAGTTTCGTTTGGT
ATCTTTTTTGTTTTAAAAAAATAGTGAGAATTCAAAATTATGTATTTACCATGTAATTTCTTTGTCTTGTATATCTACTTTTCGTAATTAGAATTGTATTTATGGATAAT
GCTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDVWVCERKLEEEEDFDNIHQQQQQLEKVSGNNVILYVGSTRKRYAISSKYLTHPLLNALIDKSKSKKLANDNEDED
DDDDCISVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF