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Clc11G17860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G17860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTubby-like F-box protein
Genome locationClcChr11:28558102..28558966
RNA-Seq ExpressionClc11G17860
SyntenyClc11G17860
Gene Ontology termsNA
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032872.1 hypothetical protein E6C27_scaffold81G00370 [Cucumis melo var. makuwa]5.8e-9089.06Show/hide
Query:  MVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLI
        MVIAMKGHPGTGKSTLAQ++ASLLKIPLIDKDDVKDCAAP+A +TTA LVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRS LCRLADVAS++GA++LI
Subjt:  MVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLI

Query:  VECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER
        VECRPSDLT WRRRLESRG DD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPV  DE VSTV+DFIVSNGGSF AP  AER
Subjt:  VECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER

KAG7037505.1 hypothetical protein SDJN02_01132, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-9187.5Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIE+R KM+IAMKGHPGTGKSTLAQ+LASLLKIPLIDKDDVKDCAA +A ++TAALVNDLSYDVV+RLASTQLRLGLSV+VDTPLSRRS  C L DV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS AG +LLIVEC+PSD TEWRRRLESRGADD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVS DE VSTVIDFIVSNGGSF APSAA
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

KGN54946.1 hypothetical protein Csa_012852 [Cucumis sativus]3.9e-9487.62Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIEERR+MVIAMKGHPGTGKSTLAQ++ASLLK PLIDKDDVKDCAAP+A +TTA+LVNDLSYDVVFRLASTQLRLGLSVVVDTPLS RS LCRLADV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS++GA++LIVECRPSDLTEWRRRLESRG DDQTNWHKPSTWR+IEMLLESYGGCTEFDVGDVPRLVVDTTAPV  DE VSTV+DFIVSNGGSF AP A 
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

Query:  ER
        +R
Subjt:  ER

XP_022940745.1 uncharacterized protein LOC111446248 [Cucurbita moschata]2.0e-9087Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIE+R KM+IAMKGHPGTGKSTLAQ+LASLLKIPLIDKDDVKDCAA +A ++TAALVNDLSYDVV+RLASTQLRLGLSV+VDTPLSRRS  C L DV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS AG +LLIVEC+PSD  EWRRRLESRGADD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVS DE VSTVIDFIVSNGGSF APSAA
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

XP_022981712.1 uncharacterized protein LOC111480776 [Cucurbita maxima]5.2e-9187Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIE+R KM+IAMKGHPGTGKSTLAQ+LASLLKIPLIDKDDVKDCAA +A ++TAALVNDLSYDVV+RLASTQLRLGLSV+VDTPLSRRS  C L DV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS AG +LLIVEC+PSDL EWRRRLESRGADD+TNWHKPSTWREIEMLLESYGGC EFDVGDVPRLVVDTTAPVS DE VSTVIDFIVSNGGSF APSAA
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

TrEMBL top hitse value%identityAlignment
A0A0A0L485 Uncharacterized protein1.9e-9487.62Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIEERR+MVIAMKGHPGTGKSTLAQ++ASLLK PLIDKDDVKDCAAP+A +TTA+LVNDLSYDVVFRLASTQLRLGLSVVVDTPLS RS LCRLADV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS++GA++LIVECRPSDLTEWRRRLESRG DDQTNWHKPSTWR+IEMLLESYGGCTEFDVGDVPRLVVDTTAPV  DE VSTV+DFIVSNGGSF AP A 
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

Query:  ER
        +R
Subjt:  ER

A0A5A7SP11 Uncharacterized protein2.8e-9089.06Show/hide
Query:  MVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLI
        MVIAMKGHPGTGKSTLAQ++ASLLKIPLIDKDDVKDCAAP+A +TTA LVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRS LCRLADVAS++GA++LI
Subjt:  MVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLI

Query:  VECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER
        VECRPSDLT WRRRLESRG DD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPV  DE VSTV+DFIVSNGGSF AP  AER
Subjt:  VECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER

A0A5D3CDQ4 Uncharacterized protein2.6e-8888.83Show/hide
Query:  MKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLIVECR
        MKGHPGTGKSTLAQ++ASLLKIPLIDKDDVKDCAAP+A +TTA LVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRS LCRLADVAS++GA++LIVECR
Subjt:  MKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLIVECR

Query:  PSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER
        PSDLT WRRRLESRG DD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPV  DE VSTV+DFIVSNGGSF AP  AER
Subjt:  PSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER

A0A6J1FRG5 uncharacterized protein LOC1114462489.7e-9187Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIE+R KM+IAMKGHPGTGKSTLAQ+LASLLKIPLIDKDDVKDCAA +A ++TAALVNDLSYDVV+RLASTQLRLGLSV+VDTPLSRRS  C L DV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS AG +LLIVEC+PSD  EWRRRLESRGADD+TNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVS DE VSTVIDFIVSNGGSF APSAA
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

A0A6J1IUR8 uncharacterized protein LOC1114807762.5e-9187Show/hide
Query:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV
        M EEIE+R KM+IAMKGHPGTGKSTLAQ+LASLLKIPLIDKDDVKDCAA +A ++TAALVNDLSYDVV+RLASTQLRLGLSV+VDTPLSRRS  C L DV
Subjt:  MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADV

Query:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA
        AS AG +LLIVEC+PSDL EWRRRLESRGADD+TNWHKPSTWREIEMLLESYGGC EFDVGDVPRLVVDTTAPVS DE VSTVIDFIVSNGGSF APSAA
Subjt:  ASIAGAKLLIVECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAGAAATTGAAGAGAGAAGGAAAATGGTGATAGCGATGAAAGGACATCCAGGAACGGGGAAAAGCACTTTGGCCCAATCCCTAGCCTCTCTCCTCAAAATCCC
TCTCATCGACAAAGACGACGTCAAGGACTGCGCCGCTCCCGTCGCCACCTCAACCACCGCCGCGCTCGTCAACGATCTCTCCTACGACGTCGTTTTCCGCCTCGCCTCCA
CACAGCTCCGCCTCGGCCTCAGCGTTGTCGTCGACACGCCTCTCTCCCGCCGATCTCTCCTCTGCCGCCTCGCCGACGTGGCTTCCATCGCCGGCGCGAAGCTTCTGATC
GTCGAGTGCAGACCGTCTGATCTAACGGAGTGGAGGCGGAGACTCGAGAGCCGTGGCGCTGATGATCAGACGAACTGGCACAAGCCGTCCACGTGGCGCGAGATCGAGAT
GCTTCTGGAAAGTTACGGCGGATGTACGGAATTCGACGTCGGCGATGTGCCGAGGCTGGTGGTCGACACGACGGCACCGGTTAGTGTCGATGAGACGGTTTCCACTGTGA
TCGATTTTATTGTATCGAACGGTGGTTCTTTCAATGCTCCGTCGGCCGCAGAAAGATGA
mRNA sequenceShow/hide mRNA sequence
CCACACTCGAATAAATATCTTTTTTCAATCCTCAAAAAAATAAATAAATAAATAAATAAATGATGAGGATAAAATTACCATCATCCACAAAATGAAATAAATCAGAACAA
GAGGAAAAGAAATGGCAGAAGAAATTGAAGAGAGAAGGAAAATGGTGATAGCGATGAAAGGACATCCAGGAACGGGGAAAAGCACTTTGGCCCAATCCCTAGCCTCTCTC
CTCAAAATCCCTCTCATCGACAAAGACGACGTCAAGGACTGCGCCGCTCCCGTCGCCACCTCAACCACCGCCGCGCTCGTCAACGATCTCTCCTACGACGTCGTTTTCCG
CCTCGCCTCCACACAGCTCCGCCTCGGCCTCAGCGTTGTCGTCGACACGCCTCTCTCCCGCCGATCTCTCCTCTGCCGCCTCGCCGACGTGGCTTCCATCGCCGGCGCGA
AGCTTCTGATCGTCGAGTGCAGACCGTCTGATCTAACGGAGTGGAGGCGGAGACTCGAGAGCCGTGGCGCTGATGATCAGACGAACTGGCACAAGCCGTCCACGTGGCGC
GAGATCGAGATGCTTCTGGAAAGTTACGGCGGATGTACGGAATTCGACGTCGGCGATGTGCCGAGGCTGGTGGTCGACACGACGGCACCGGTTAGTGTCGATGAGACGGT
TTCCACTGTGATCGATTTTATTGTATCGAACGGTGGTTCTTTCAATGCTCCGTCGGCCGCAGAAAGATGAAGCGATATTCTTCAGTTAAATTATAAATATATATTTTTTT
TCTTTTTTGAAAAAATAAATATATTAAGTTGTACATGTACTCTAATTTATTTAGCTTCAGTCAATGGTAAGTGTTTGATAATTATTTTGTTTTTA
Protein sequenceShow/hide protein sequence
MAEEIEERRKMVIAMKGHPGTGKSTLAQSLASLLKIPLIDKDDVKDCAAPVATSTTAALVNDLSYDVVFRLASTQLRLGLSVVVDTPLSRRSLLCRLADVASIAGAKLLI
VECRPSDLTEWRRRLESRGADDQTNWHKPSTWREIEMLLESYGGCTEFDVGDVPRLVVDTTAPVSVDETVSTVIDFIVSNGGSFNAPSAAER