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Clc11G18980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G18980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCLAVATA3/ESR-RELATED 3
Genome locationClcChr11:29479741..29486639
RNA-Seq ExpressionClc11G18980
SyntenyClc11G18980
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0033612 - receptor serine/threonine kinase binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607905.1 hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sororia]3.6e-0868.85Show/hide
Query:  MGAAI-IRIMNFFFLCFIIVIILLPFLSFGAPSSSPGGFMESAREALMASLHRQGGKPSQL
        MGAAI ++++    LCF IVIIL+PFLSFGAP  SP GFMESAREALMASLHRQG +  Q+
Subjt:  MGAAI-IRIMNFFFLCFIIVIILLPFLSFGAPSSSPGGFMESAREALMASLHRQGGKPSQL
KGN55081.1 hypothetical protein Csa_012463 [Cucumis sativus]8.8e-2379.75Show/hide
Query:  LLFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
        +LFW +VLILLLCSSISESRLLSS       SS+ +K+NELFVKN +EMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Subjt:  LLFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
KGN55082.1 hypothetical protein Csa_012608 [Cucumis sativus]6.6e-1064.71Show/hide
Query:  MGAAIIRIMNFFFLCFIIVIILLPFLSFGA-------PSSS-PGGFMESAREALMASLHRQGGKPSQL
        M  AII ++ FFF+CFI VIILLPFLSFG+       PSSS P GFMESA++ALMASL R+GGKP Q+
Subjt:  MGAAIIRIMNFFFLCFIIVIILLPFLSFGA-------PSSS-PGGFMESAREALMASLHRQGGKPSQL
TrEMBL top hitse value%identityAlignment
A0A0A0L3B3 Uncharacterized protein3.2e-1064.71Show/hide
Query:  MGAAIIRIMNFFFLCFIIVIILLPFLSFGA-------PSSS-PGGFMESAREALMASLHRQGGKPSQL
        M  AII ++ FFF+CFI VIILLPFLSFG+       PSSS P GFMESA++ALMASL R+GGKP Q+
Subjt:  MGAAIIRIMNFFFLCFIIVIILLPFLSFGA-------PSSS-PGGFMESAREALMASLHRQGGKPSQL
A0A0A0L4M1 Uncharacterized protein4.3e-2379.75Show/hide
Query:  LLFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
        +LFW +VLILLLCSSISESRLLSS       SS+ +K+NELFVKN +EMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Subjt:  LLFWVVVLILLLCSSISESRLLSS-------SSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
SwissProt top hitse value%identityAlignment
A0A072V9Z0 CLAVATA3/ESR (CLE)-related protein 332.3e-0538.89Show/hide
Query:  WVVVLILLLCSSI---SESRLLSSSSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
        W ++  +LL +SI    ++R L SS +    +  FV++VK+++K I+  K+ LG  + + RLSP GPDP HH
Subjt:  WVVVLILLLCSSI---SESRLLSSSSTLDKRNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Q3EDH8 CLAVATA3/ESR (CLE)-related protein 31.9e-0446.99Show/hide
Query:  SQLLFWV--VVLILLLCSSISESRLL------SSSSTLDK-RNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
        + L  WV  V+L++L  +S+ E R L      S SS L K R ELF + +KEM      E+  LG    SKRLSPGGPDPRHH
Subjt:  SQLLFWV--VVLILLLCSSISESRLL------SSSSTLDK-RNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Arabidopsis top hitse value%identityAlignment
AT1G06225.1 CLAVATA3/ESR-RELATED 31.4e-0546.99Show/hide
Query:  SQLLFWV--VVLILLLCSSISESRLL------SSSSTLDK-RNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
        + L  WV  V+L++L  +S+ E R L      S SS L K R ELF + +KEM      E+  LG    SKRLSPGGPDPRHH
Subjt:  SQLLFWV--VVLILLLCSSISESRLL------SSSSTLDK-RNELFVKNVKEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
AT2G31081.1 CLAVATA3/ESR-RELATED 49.8e-0443.42Show/hide
Query:  WVVVLILLLCSSISESR-LLSSSSTLDKRNELFVKNVKEMLKFIIEEK--EKLGRHFV----SKRLSPGGPDPRHH
        WV +++LLL  S+ + R L++  S  D  N    K ++E+LK   E K   K G+  +    SKRLSPGGPDPRHH
Subjt:  WVVVLILLLCSSISESR-LLSSSSTLDKRNELFVKNVKEMLKFIIEEK--EKLGRHFV----SKRLSPGGPDPRHH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGCAGCCATTATCCGAATCATGAACTTCTTCTTCCTTTGCTTTATTATTGTAATAATTTTGCTGCCATTTTTGAGCTTCGGAGCTCCTTCTTCTTCTCCAGGTGG
GTTTATGGAAAGTGCTAGAGAAGCATTAATGGCTAGCCTCCATAGGCAAGGTGGAAAGCCCTCTCAGCTTTTGTTTTGGGTTGTTGTGTTGATATTGCTTTTGTGTTCTT
CCATTTCTGAAAGTCGTTTGCTTTCTTCTTCTTCTACTTTGGATAAGAGAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATTATTGAAGAGAAAGAG
AAGCTTGGAAGACATTTTGTATCCAAAAGACTCAGCCCAGGAGGACCTGATCCACGTCATCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCGCAGCCATTATCCGAATCATGAACTTCTTCTTCCTTTGCTTTATTATTGTAATAATTTTGCTGCCATTTTTGAGCTTCGGAGCTCCTTCTTCTTCTCCAGGTGG
GTTTATGGAAAGTGCTAGAGAAGCATTAATGGCTAGCCTCCATAGGCAAGGTGGAAAGCCCTCTCAGCTTTTGTTTTGGGTTGTTGTGTTGATATTGCTTTTGTGTTCTT
CCATTTCTGAAAGTCGTTTGCTTTCTTCTTCTTCTACTTTGGATAAGAGAAACGAATTATTTGTAAAGAATGTGAAAGAAATGTTGAAGTTTATTATTGAAGAGAAAGAG
AAGCTTGGAAGACATTTTGTATCCAAAAGACTCAGCCCAGGAGGACCTGATCCACGTCATCATTAG
Protein sequenceShow/hide protein sequence
MGAAIIRIMNFFFLCFIIVIILLPFLSFGAPSSSPGGFMESAREALMASLHRQGGKPSQLLFWVVVLILLLCSSISESRLLSSSSTLDKRNELFVKNVKEMLKFIIEEKE
KLGRHFVSKRLSPGGPDPRHH