CuGenDBv2

Gene ID	Clc11G19030
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Glutamate receptor
Genome location	ClcChr11:29548589..29549104
RNA-Seq Expression	Clc11G19030
Synteny	Clc11G19030
Gene Ontology terms	GO:0034220 - ion transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0015276 - ligand-gated ion channel activity (molecular function)
InterPro domains	IPR028081 - Leucine-binding protein domain IPR028082 - Periplasmic binding protein-like I

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33806.1 glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo subsp. melo]

1.2e-39

84.76

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+SSK+VDGGRG+IGAIVDK+SRIGKEESLAMLMAVEDFNNIN +NFSF I+DSK+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

XP_008463717.1 PREDICTED: glutamate receptor 2.8-like [Cucumis melo]

1.2e-39

84.76

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+SSK+VDGGRG+IGAIVDK+SRIGKEESLAMLMAVEDFNNIN +NFSF I+DSK+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

XP_011654053.1 glutamate receptor 2.8 isoform X1 [Cucumis sativus]

2.3e-38

81.9

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+ SK+VDG RG+IGAIVDK+SRIGKEESLAMLMAVEDFNN+ND+NFSF I+D K+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

XP_022139729.1 glutamate receptor 2.8-like [Momordica charantia]

2.8e-36

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        MG F FLFSFLLFAL+VSGKHET    SSK+ DGG+GRIGAIVDKSSRIGKEESLAMLMAVEDFN++++ NFS  IRDSKSDPNQAALAA+DLI+M QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

XP_038897242.1 glutamate receptor 2.8-like [Benincasa hispida]

2.5e-40

85.71

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        MG  PFLFSF LFALIVSGKHET RTMSS++V+GGRG+IGAIVDKSSRIGKEESLAMLMA+EDFN IND+NFSF IRD KSDPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L037 Glutamate receptor

1.1e-38

81.9

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+ SK+VDG RG+IGAIVDK+SRIGKEESLAMLMAVEDFNN+ND+NFSF I+D K+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

A0A1S3CJX0 Glutamate receptor

6.0e-40

84.76

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+SSK+VDGGRG+IGAIVDK+SRIGKEESLAMLMAVEDFNNIN +NFSF I+DSK+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

A0A5A7VLZ3 Glutamate receptor

6.0e-40

84.76

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+SSK+VDGGRG+IGAIVDK+SRIGKEESLAMLMAVEDFNNIN +NFSF I+DSK+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

A0A6J1CDU5 Glutamate receptor

1.4e-36

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        MG F FLFSFLLFAL+VSGKHET    SSK+ DGG+GRIGAIVDKSSRIGKEESLAMLMAVEDFN++++ NFS  IRDSKSDPNQAALAA+DLI+M QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

E5GBG4 Glutamate receptor

6.0e-40

84.76

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Query:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR
        M  FPFLFSFL FALIVSG HET RT+SSK+VDGGRG+IGAIVDK+SRIGKEESLAMLMAVEDFNNIN +NFSF I+DSK+DPNQAALAAEDLISM QV+
Subjt:  MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVR

Query:  VLIGP
        VLIGP
Subjt:  VLIGP

SwissProt top hits

e value

%identity

Alignment

Q8LGN1 Glutamate receptor 1.4

1.9e-06

35.85

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Query:  FLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNIND---RNFSFFIRDSKSDPNQAALAAEDLISMAQVRVL
        F  +F+ FA+  SG ++ +      VV     RIG +VD  S  GK  + ++ MA+ DF ++N+      S   RDS  DP QA  AA DL+   QV  L
Subjt:  FLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNIND---RNFSFFIRDSKSDPNQAALAAEDLISMAQVRVL

Query:  IGPTNL
        +G  +L
Subjt:  IGPTNL

Arabidopsis top hits

e value

%identity

Alignment

AT2G29100.1 glutamate receptor 2.9

8.9e-04

34.25

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Query:  RIGAIVDKSSRIGKEESLAMLMAVEDFNNINDR---NFSFFIRDSKSDPNQAALAAEDLISMAQVRVLIGPTN
        ++G ++D ++   K    ++ MAV DF   +       +  +RDS  D  QA+ AA DLI   QV  +IGP N
Subjt:  RIGAIVDKSSRIGKEESLAMLMAVEDFNNINDR---NFSFFIRDSKSDPNQAALAAEDLISMAQVRVLIGPTN

AT3G07520.1 glutamate receptor 1.4

1.3e-07

35.85

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Query:  FLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNIND---RNFSFFIRDSKSDPNQAALAAEDLISMAQVRVL
        F  +F+ FA+  SG ++ +      VV     RIG +VD  S  GK  + ++ MA+ DF ++N+      S   RDS  DP QA  AA DL+   QV  L
Subjt:  FLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNIND---RNFSFFIRDSKSDPNQAALAAEDLISMAQVRVL

Query:  IGPTNL
        +G  +L
Subjt:  IGPTNL

Sequences

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CDS sequence

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ATGGGAAACTTTCCCTTTCTGTTTTCTTTCTTGTTGTTTGCTCTGATAGTTTCTGGGAAGCATGAAACTAACAGAACTATGAGCTCAAAAGTGGTTGATGGTGGAAGAGG
CAGAATAGGGGCCATTGTAGACAAAAGTTCCAGGATTGGTAAGGAAGAGAGTTTAGCTATGCTGATGGCTGTAGAGGATTTTAACAACATCAACGATCGAAATTTCAGTT
TTTTCATCAGAGACTCCAAAAGTGATCCTAATCAGGCAGCTCTTGCAGCTGAAGATCTGATCAGCATGGCACAAGTTCGGGTTCTTATAGGGCCCACAAACCTGGGAAGA
AGTTTCTGTAGTTGCCAAGGTCGGAAATGA

mRNA sequence

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Protein sequence

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MGNFPFLFSFLLFALIVSGKHETNRTMSSKVVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNNINDRNFSFFIRDSKSDPNQAALAAEDLISMAQVRVLIGPTNLGR
SFCSCQGRK

Clc11G19030 (gene) of Watermelon (cordophanus) v2 genome