CuGenDBv2

Gene ID	Clc11G19050
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Glutamate receptor
Genome location	ClcChr11:29557925..29558887
RNA-Seq Expression	Clc11G19050
Synteny	Clc11G19050
Gene Ontology terms	GO:0006811 - ion transport (biological process) GO:0005886 - plasma membrane (cellular component) GO:0015276 - ligand-gated ion channel activity (molecular function) GO:0038023 - signaling receptor activity (molecular function)
InterPro domains	IPR028082 - Periplasmic binding protein-like I

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33805.1 glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo subsp. melo]

4.9e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

TYK27933.1 glutamate receptor 2.8-like isoform X2 [Cucumis melo var. makuwa]

4.9e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

XP_008463716.1 PREDICTED: glutamate receptor 2.8-like isoform X2 [Cucumis melo]

4.9e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

XP_022976413.1 glutamate receptor 2.8-like [Cucurbita maxima]

3.8e-43

67.79

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTWE+ASVV+E                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGII SWDWHLVNVIYEDRDFSTT IFP LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

XP_038898557.1 glutamate receptor 2.8-like [Benincasa hispida]

9.6e-47

72.48

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIE+FNSL+NQNFSLII+DSRSDPN   LAAK+LISVQQVHALIG QTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AI GIISSWDWHLVNVIYEDRDFSTTG+FP LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CLG9 Glutamate receptor

2.4e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

A0A5A7VK72 Glutamate receptor

2.4e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

A0A5D3DW80 Glutamate receptor

2.4e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

A0A6J1IM27 Glutamate receptor

1.8e-43

67.79

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAM MAIEDFNSL+N+NFSL+I+DSRSDPN   LAAK+LIS+Q+V  LIGPQTWE+ASVV+E                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGII SWDWHLVNVIYEDRDFSTT IFP LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

E5GBG3 Glutamate receptor

2.4e-43

68.46

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Query:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP
        IGKEEILAMHMAIEDFNSL+NQNFSL+I+D+R+DPN   LAAK+LISVQ+V ALIGPQTWEMASVVAE                             ASP
Subjt:  IGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPN---LAAKELISVQQVHALIGPQTWEMASVVAE-----------------------------ASP

Query:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE
        SQLNQM+AIAGI+SS DWHLVNVIYED DFSTTG+F  LVHALKDVGAE
Subjt:  SQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGAE

SwissProt top hits

e value

%identity

Alignment

Q8LGN0 Glutamate receptor 2.7

1.2e-04

29.45

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Query:  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEMAS-VVAEASPSQL---------------------------
        + ++++++ DF   ++      ++ I+DS  D    + AA +LI  +QV A+IGP+T   A  ++  A  SQ+                           
Subjt:  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEMAS-VVAEASPSQL---------------------------

Query:  -NQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGA
         +Q+KAIA I+ S+ W  V  IY D +F   GI P L  AL+DV A
Subjt:  -NQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGA

Arabidopsis top hits

e value

%identity

Alignment

AT2G29120.1 glutamate receptor 2.7

8.7e-06

29.45

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Query:  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEMAS-VVAEASPSQL---------------------------
        + ++++++ DF   ++      ++ I+DS  D    + AA +LI  +QV A+IGP+T   A  ++  A  SQ+                           
Subjt:  ILAMHMAIEDFNSLNNQ---NFSLIIKDSRSD---PNLAAKELISVQQVHALIGPQTWEMAS-VVAEASPSQL---------------------------

Query:  -NQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGA
         +Q+KAIA I+ S+ W  V  IY D +F   GI P L  AL+DV A
Subjt:  -NQMKAIAGIISSWDWHLVNVIYEDRDFSTTGIFPDLVHALKDVGA

AT3G51480.1 glutamate receptor 3.6

4.8e-04

27.34

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Query:  MIGKEEILAMHMAIEDFNS----LNNQNFSLIIKDSRSDPNLAAKELISVQQVH--ALIGPQTWEMASVVA-----------------------------
        +IGK   +AM  A+ED N+    LN     +I+ D++ +  ++  E +   +    A+IGPQ    A VVA                             
Subjt:  MIGKEEILAMHMAIEDFNS----LNNQNFSLIIKDSRSDPNLAAKELISVQQVH--ALIGPQTWEMASVVA-----------------------------

Query:  EASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGI
          S + L QM AIA I+  + W  V  IY D D+   G+
Subjt:  EASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFSTTGI

Sequences

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CDS sequence

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ATGTTTCTGGAAAGCATGAAACCGAAAGAAATGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAACAATCAAAATTTCAGTCT
TATCATTAAAGATTCCAGAAGTGATCCCAATCTTGCAGCTAAAGAGCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAG
TTGCTGAGGCTTCTCCTTCCCAGTTAAATCAAATGAAGGCTATAGCTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCA
ACCACAGGAATATTTCCTGATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCACTGCATCTATTTGA

mRNA sequence

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Protein sequence

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MFLESMKPKEMIGKEEILAMHMAIEDFNSLNNQNFSLIIKDSRSDPNLAAKELISVQQVHALIGPQTWEMASVVAEASPSQLNQMKAIAGIISSWDWHLVNVIYEDRDFS
TTGIFPDLVHALKDVGAENFCSAYVFQVGTASI

Clc11G19050 (gene) of Watermelon (cordophanus) v2 genome