; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G19100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G19100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA exonuclease 4
Genome locationClcChr11:29591214..29595672
RNA-Seq ExpressionClc11G19100
SyntenyClc11G19100
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]1.8e-13193.58Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK PKPKLLNPNWALLQQ+L PHGSNH  S+TV KSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]2.0e-13594.72Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

XP_038897120.1 RNA exonuclease 4 isoform X1 [Benincasa hispida]9.8e-13091.58Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQ--------QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQ
        MESQLKKT KPKLLNPNWALLQQ        +LKP GSNHSRSSTVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TD VAMDCEMVGVGQ
Subjt:  MESQLKKTPKPKLLNPNWALLQQ--------QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQ

Query:  GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKE
        GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKE
Subjt:  GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKE

Query:  GSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        G +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Subjt:  GSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]7.5e-13091.91Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQ-------QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQG
        MESQLKKT KPKLLNPNWALLQQ       +LKP GSNHSRSSTVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TD VAMDCEMVGVGQG
Subjt:  MESQLKKTPKPKLLNPNWALLQQ-------QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQG

Query:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG
        NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEG
Subjt:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEG

Query:  SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
         +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Subjt:  SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]6.2e-13294.34Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        MESQLKKT KPKLLNPNWALLQQ+LKP GSNHSRSSTVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DVRDTSEYQFFQKEG +RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 48.7e-13293.58Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK PKPKLLNPNWALLQQ+L PHGSNH  S+TV KSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

A0A1S3CJW0 RNA exonuclease 49.9e-13694.72Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

A0A5A7VEJ2 RNA exonuclease 41.1e-12395.45Show/hide
Query:  QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV
        +LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV
Subjt:  QLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV

Query:  DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARS
        DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARS
Subjt:  DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARS

Query:  AMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        AMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  AMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

A0A6J1FBB2 RNA exonuclease 42.3e-12488.3Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        MESQLKK+ KPKLLNPNWALLQQ+L PHGS   RSS+VPKSEASSKTLLGKRK+RSD ES++S K +LIPVNDDFS+TD VAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VT+VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ+ G +RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE+KLKLKQKKR+PRKKSKDG G E
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

E5GBF8 RNA exonuclease 49.9e-13694.72Show/hide
Query:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR
        M SQLKK PKPKLLNPNWA+LQQ+LKPHGSNHS++STVPKSEASSKTLLGKRKERSDVESN+SQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGR
Subjt:  MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRH

Query:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE
        LAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG GFE
Subjt:  LAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 41.5e-4052.17Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKD
        +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QK+ A++++G+ILVGHAL++DL+AL+LSHPK  
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKD

Query:  VRDTSEYQFFQK---EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        +RDTS +  F+K   +G   +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Subjt:  VRDTSEYQFFQK---EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 42.8e-4248.63Show/hide
Query:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L H
Subjt:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRK
        PKK +RDT +Y+ F++  +  + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + P+K
Subjt:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRK

Q6PAQ4 RNA exonuclease 42.1e-4248.48Show/hide
Query:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K VAE++KG+ILVGHAL NDLK L L H
Subjt:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  + +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Subjt:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 44.3e-4348.11Show/hide
Query:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L H
Subjt:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKKRRPRK
        PKK +RDT +Y+ F++  +  + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K + P+K
Subjt:  PKKDVRDTSEYQFFQK--EGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKKRRPRK

Q9GZR2 RNA exonuclease 41.6e-4249.7Show/hide
Query:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH
        +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK VAE++KG+ILVGHAL NDLK L L H
Subjt:  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSH

Query:  PKKDVRDTSEYQFF--QKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
        PKK +RDT +Y+ F  Q +  + +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +
Subjt:  PKKDVRDTSEYQFF--QKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.2 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.3 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         +LVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KILVGHALRNDLKAL

Query:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P   +RDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKKDVRDTSEYQFFQKEG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-9466.42Show/hide
Query:  MESQLKK------TPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGN
        M S LK+      TPKP  LNPNW+LLQQ+LK     ++R S+ P++ +S   +LGKRKER D E +  + N L PVNDD S+TDEVAMDCEMVGV QG 
Subjt:  MESQLKK------TPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGN

Query:  KSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGS
        KSALGRVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGKILVGHAL NDLKALLL+HPKKD+RDT EYQ F K  +
Subjt:  KSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGS

Query:  KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGS
        +++L+HLA+E LG +IQNGEHCP++DAR+AM+LYQK RKEWEK+VK + ++ LKQKKR+P+KK+K G+
Subjt:  KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGS

AT3G27970.1 Exonuclease family protein5.7e-1932.37Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKILVGHALR
        VA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A     VQ+++ E +              K +ILVGH L 
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKILVGHALR

Query:  NDLKALLLSHPKKDVRDTSEYQFFQKEGS-KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        +DL  L L +P   +RDT++Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Subjt:  NDLKALLLSHPKKDVRDTSEYQFFQKEGS-KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAACAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTAC
TGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATTATTCCCAGAAGAATATTCTCATTCCGGTGAATGATG
ATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTT
ATATACGATGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCCAAGGATTTTCCAACTGTCCA
GAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCT
CCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGTGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGAT
GCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAA
ATCCAAGGATGGAAGTGGTTTTGAATGA
mRNA sequenceShow/hide mRNA sequence
GAGCACATAAAATTTAACACCTTTCAAATTTTAAGTTTCAAATACTATTTGATAAACTTGTAAATTTTAAAACGATGAAAAATTAGAAATTAGAACCTCCTCCTTCCTCT
ATTTTCCGGTTTAGGGCCACCGGGCGAAGACGGCGGAAGTGGACGGCTATTAGTAGTATGTAAATCGTGGGAGTTGGGCGTCAAAGTGGGAGCTTCAACACTATGGAATC
TCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAACAGCTGAAACCCCATGGTTCAAACCATTCAAGGTCCTCTACTGTTCCGA
AATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATTATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGT
GTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGA
TGAGTTTGTACGCCCTATAGAGCGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCCAAGGATTTTCCAACTGTCCAGAAGAGAG
TGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTAC
CAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGTGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTC
TGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGG
ATGGAAGTGGTTTTGAATGACTTAGATCTTACAAAAATGTGTAACTTGGTAGTATAGAAGTGAGTAAATTACAGGCATTTGAAGCCATGAGTTCCATTCTTATCATGAGT
GAGACTATTGGCCTGTGTTCTTGGCCAAATTTTTGATCCTCAGGCTCGAAAAGAATTACTGGTTATTAATGTTGTATGGATACATCAACCTAATATCCTAAAGCAACTTT
TAATCTTGAATCATAAAATGTGTAATGGAGAAGTTAATGTAGGTTGTATTTAATAGTAATGTTATTAAAGTGAATAATAGTTATCTTAATATAAATTATATAATGAATGT
GAAAGTAAAA
Protein sequenceShow/hide protein sequence
MESQLKKTPKPKLLNPNWALLQQQLKPHGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNYSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNV
IYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVED
ARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE