CuGenDBv2

Gene ID	Clc11G19110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Exonuclease domain-containing protein
Genome location	ClcChr11:29597217..29600462
RNA-Seq Expression	Clc11G19110
Synteny	Clc11G19110
Gene Ontology terms	GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000175 - 3'-5'-exoribonuclease activity (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR013520 - Exonuclease, RNase T/DNA polymerase III IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146041.1 uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 [Cucumis sativus]

2.1e-172

86.92

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MFLRA LLK SSFYSIPCHPL+P+SLSSSICSS RTPF+IRCHS+ P +HEPSSS+ SE+PDVADNRWRPTCLYFT G+CTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++ARSNHMRTQD D+FLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFY KKATGM TMMRQLE+PLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMV DGAHLQ+TARRNPKS QHVKFLFENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

XP_008463707.1 PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 [Cucumis melo]

4.3e-170

86.05

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MFLRA LLKLSSFYSIPCHPL+P+SLSSSICSS RTPF+IRCHS+LP +HEPSSS+PS++PDVADNRWRPTCLYFT G+CTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++ARSNHMRTQD+D+FLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILY DVIQQFEDWLV HQLWRKE GGVLDRAAFVTCGNWDIKTQVPHQC+VSKMKLPDYFMEWINIKDVYLNFY KKATGM TMMRQLE+ LVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMV DGAHLQITARRNPKS Q VKFLFENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

XP_022935722.1 uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita moschata]

7.6e-167

85.47

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MF+RAPLLK+SSFYSIPCH LVPL LSS+ICSS RTP +IRCHSSLPTAH+PSSS+PSE  DV  NRWRP CLY+TQ KCTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++A S HMRTQDI+FFLVLDLEGKVEIIEFPVILVNAKT+ VTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVS MKLPDYFMEWINIKDVYLNFYQKKATGM TMMRQLEIPLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMVADGAHLQITARRNP S QHVKF FENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

XP_022976542.1 uncharacterized exonuclease domain-containing protein At3g15140 [Cucurbita maxima]

7.6e-167

85.47

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MF+RAPLLK+SSFYSIPCH LVPLSLSS+ICSS RTP AIRCHSSLPTAHEPSSS+PSE  DV  NRWRP CLY+TQ KCTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++A S HMRTQDI+FFLVLDLEGKVEIIEFPVILVNAKT+ VTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQ+WRK+LGGVLDRAAFVTCGNWDIKTQVPHQCSVS MKLPDYFMEWINIKDVYLNFYQKKATGM  MMRQLEIPLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMVADGAHLQITARRNP S QHVKF FENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

XP_038896828.1 uncharacterized exonuclease domain-containing protein At3g15140 [Benincasa hispida]

6.7e-171

87.21

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MFLRAPLLKLS  YSIPCH LVPLSLSSSIC SSRTPF +RCHS+LP +HEPSSS PSE+PDVADNRWRPTCLYFTQGKCTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDIS ELQV++ARSNHMR QD+DFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAIL+KDVIQ+FEDWLV HQLWRKELGGVLDRAAFVTCGNWDIKTQ PHQCSVSKMKLPDYFMEWINIKDVYLNFY KKATGM TMMRQLEIPLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRV+QRMVADGAHLQ TARRNPKS QHVKFLFENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4N2 Exonuclease domain-containing protein

1.0e-172

86.92

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MFLRA LLK SSFYSIPCHPL+P+SLSSSICSS RTPF+IRCHS+ P +HEPSSS+ SE+PDVADNRWRPTCLYFT G+CTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++ARSNHMRTQD D+FLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFY KKATGM TMMRQLE+PLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMV DGAHLQ+TARRNPKS QHVKFLFENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

A0A1S3CJV9 uncharacterized exonuclease domain-containing protein At3g15140 isoform X1

2.1e-170

86.05

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MFLRA LLKLSSFYSIPCHPL+P+SLSSSICSS RTPF+IRCHS+LP +HEPSSS+PS++PDVADNRWRPTCLYFT G+CTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++ARSNHMRTQD+D+FLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILY DVIQQFEDWLV HQLWRKE GGVLDRAAFVTCGNWDIKTQVPHQC+VSKMKLPDYFMEWINIKDVYLNFY KKATGM TMMRQLE+ LVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMV DGAHLQITARRNPKS Q VKFLFENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

A0A6J1CCI3 uncharacterized exonuclease domain-containing protein At3g15140

2.8e-159

82.42

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEY-PDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLS
        MFLRAPLLK+SSFYSIPC+PLVPLSL SS+ SSSRTPF IRCH+SLP AHEPSSS+P  + P+ ADNRWRP CLY+TQGKCTM                 
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEY-PDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLS

Query:  YVMDDPLHIKKFNHDISRELQVEIARSNHMRT--QDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRV
          MDDPLH+KKFNHDISR LQV  ARSNH RT  QDIDFFLVLDLEGKVEIIEFPVILV+AKT+GVTGFFHRFVRPS MSE+RINEYIEGKYGKFGVDRV
Subjt:  YVMDDPLHIKKFNHDISRELQVEIARSNHMRT--QDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRV

Query:  WHDTAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGS
        WHDTAI YK+VIQQFEDWLV HQLW+KELGG LDRAAFVTCGNWDIKTQVPHQCSVS ++LP+YFMEWINIKDVYLNFYQKKATGM TMMRQLEIPL+GS
Subjt:  WHDTAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGS

Query:  HHLGIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        HHLGIDDTKNIVRVLQRMVADGA LQITARRNP S QHVKFLFENRI
Subjt:  HHLGIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

A0A6J1F6E0 uncharacterized exonuclease domain-containing protein At3g15140

3.7e-167

85.47

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MF+RAPLLK+SSFYSIPCH LVPL LSS+ICSS RTP +IRCHSSLPTAH+PSSS+PSE  DV  NRWRP CLY+TQ KCTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++A S HMRTQDI+FFLVLDLEGKVEIIEFPVILVNAKT+ VTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVS MKLPDYFMEWINIKDVYLNFYQKKATGM TMMRQLEIPLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMVADGAHLQITARRNP S QHVKF FENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

A0A6J1IG11 uncharacterized exonuclease domain-containing protein At3g15140

3.7e-167

85.47

Show/hide

Query:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY
        MF+RAPLLK+SSFYSIPCH LVPLSLSS+ICSS RTP AIRCHSSLPTAHEPSSS+PSE  DV  NRWRP CLY+TQ KCTM                  
Subjt:  MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSY

Query:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD
         MDDPLHIKKFNHDISRELQV++A S HMRTQDI+FFLVLDLEGKVEIIEFPVILVNAKT+ VTGFFHRFVRPSRMSE+RINEYIEGKYGKFGVDRVWHD
Subjt:  VMDDPLHIKKFNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHD

Query:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL
        TAILYKDVIQQFEDWLV HQ+WRK+LGGVLDRAAFVTCGNWDIKTQVPHQCSVS MKLPDYFMEWINIKDVYLNFYQKKATGM  MMRQLEIPLVGSHHL
Subjt:  TAILYKDVIQQFEDWLVHHQLWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHL

Query:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI
        GIDDTKNIVRVLQRMVADGAHLQITARRNP S QHVKF FENRI
Subjt:  GIDDTKNIVRVLQRMVADGAHLQITARRNPKS-QHVKFLFENRI

SwissProt top hits

e value

%identity

Alignment

A6QLH5 ERI1 exoribonuclease 3

4.5e-21

Show/hide

Query:  QDIDFFLVLDLEGKV--------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWR
        Q   +FLVLD E           EIIEFP++ +N +TM +   FH +V+P  +   ++  +        G+ +   D     + V+++ ++W+       
Subjt:  QDIDFFLVLDLEGKV--------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWR

Query:  KELGGVLD---RAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVY---LNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVA
        KE  G+LD   ++ FVTCG+WD+K  +P QC    + + DYF +WIN+K  Y   +  + K   G++ M + L +  +G  H GIDD KNI  +++ +  
Subjt:  KELGGVLD---RAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVY---LNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVA

Query:  DGAHLQITAR
         G   + T++
Subjt:  DGAHLQITAR

Q5FVR4 3'-5' exoribonuclease 1

2.4e-22

29.76

Show/hide

Query:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK
        D+  ++D E             EIIEFPV+L+N  ++ +   F ++VRP   S+  ++E+     G  G+ +   D A  +  V+++  +W+   +L   
Subjt:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK

Query:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL
           G   +   +T G+WD+   +  QC +S++K P +  +WINI+  Y NFY+  +  T +  M+ +L +   G  H G+DD+KNI R+  RM+ DG  L
Subjt:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL

Query:  QITAR
        +I  +
Subjt:  QITAR

Q7TMF2 3'-5' exoribonuclease 1

5.4e-22

29.76

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Query:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK
        D+  ++D E             EIIEFPV+L+N  T+ +   F ++VRP      +++E+     G  G+ +   D A  +  V+++  +W+   +L   
Subjt:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK

Query:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL
           G   +   +T G+WD+   +  QC +S++K P +  +WINI+  Y NFY+  +  T +  M+ +L +   G  H G+DD+KNI R+  RM+ DG  L
Subjt:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL

Query:  QITAR
        +I  +
Subjt:  QITAR

Q8IV48 3'-5' exoribonuclease 1

9.1e-22

29.27

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Query:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK
        D+  ++D E             EIIEFPV+L+N  T+ +   F ++VRP      +++++        G+ +   D A  +  V+++  DW+   +L   
Subjt:  DFFLVLDLEGKV----------EIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRK

Query:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL
           G   + + +T G+WD+   +  QC +S++K P +  +WINI+  Y NFY+  +  T +  M+ +L +   G  H G+DD+KNI R+  RM+ DG  L
Subjt:  ELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQ--KKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHL

Query:  QITAR
        +I  +
Subjt:  QITAR

Q8W566 Uncharacterized exonuclease domain-containing protein At3g15140

1.4e-99

55.97

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Query:  ICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYP--DVADN-RWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKKFNHDISRELQVEIARS
        +C+SS +       S   ++   SSSSPS +   + ++N RWRP CLY+T GKCT                    MDDP H++ FNHD S+EL+V  A  
Subjt:  ICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYP--DVADN-RWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKKFNHDISRELQVEIARS

Query:  NHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKEL
           ++Q+ +FFLV+DLEGKVEI+EFP+++V+AKTM V   FHRFVRP++MSEQ IN+YIEGKYG+ GVDRVWHDTAI +K V+++FE WL  H LW K+ 
Subjt:  NHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKEL

Query:  GGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITA
           L+ AAFVTCGNWDIKT++P QC VS + LP YFMEWIN+KDVYLNFY ++A GMV+MMRQ  I L+GSHHLGIDDTKNI RV+QRM+++GA L++TA
Subjt:  GGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITA

Query:  RRNPKS-QHVKFLFENRI
        RR+  + ++V+FLF+NRI
Subjt:  RRNPKS-QHVKFLFENRI

Arabidopsis top hits

e value

%identity

Alignment

AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.0e-100

55.97

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Query:  ICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYP--DVADN-RWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKKFNHDISRELQVEIARS
        +C+SS +       S   ++   SSSSPS +   + ++N RWRP CLY+T GKCT                    MDDP H++ FNHD S+EL+V  A  
Subjt:  ICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYP--DVADN-RWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKKFNHDISRELQVEIARS

Query:  NHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKEL
           ++Q+ +FFLV+DLEGKVEI+EFP+++V+AKTM V   FHRFVRP++MSEQ IN+YIEGKYG+ GVDRVWHDTAI +K V+++FE WL  H LW K+ 
Subjt:  NHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQLWRKEL

Query:  GGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITA
           L+ AAFVTCGNWDIKT++P QC VS + LP YFMEWIN+KDVYLNFY ++A GMV+MMRQ  I L+GSHHLGIDDTKNI RV+QRM+++GA L++TA
Subjt:  GGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITA

Query:  RRNPKS-QHVKFLFENRI
        RR+  + ++V+FLF+NRI
Subjt:  RRNPKS-QHVKFLFENRI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTCTGAGAGCTCCGCTGCTTAAGCTTTCATCATTCTACTCAATCCCATGTCATCCTCTGGTTCCGTTGTCTCTCTCTTCCTCAATTTGTTCTTCTTCTCGCACACC
TTTCGCCATCCGATGCCATTCATCTCTCCCCACTGCCCACGAACCATCTTCTTCATCTCCCTCTGAATACCCCGATGTGGCGGATAATCGTTGGCGGCCCACGTGTTTGT
ATTTCACACAGGGCAAGTGCACAATGTTGAATTTTTATAAGGAACTCCATTATTTGAGAATTGAAGAACTCTTGTCTTATGTTATGGATGATCCACTCCACATAAAGAAG
TTCAATCATGATATCTCCAGGGAGCTTCAGGTAGAAATTGCTAGGTCAAACCATATGCGAACTCAGGACATTGATTTTTTTCTGGTGCTTGATTTGGAGGGTAAAGTTGA
AATTATTGAGTTTCCAGTCATATTAGTCAATGCCAAGACAATGGGTGTGACAGGTTTTTTCCACAGGTTTGTTAGGCCATCAAGAATGAGTGAACAAAGGATAAATGAAT
ACATTGAAGGAAAATACGGCAAGTTTGGAGTTGACCGTGTCTGGCATGACACAGCCATACTGTACAAGGATGTTATTCAACAGTTCGAAGATTGGCTGGTTCATCATCAG
CTATGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGCAGCATTTGTGACATGTGGCAACTGGGATATAAAAACTCAGGTCCCACATCAATGTAGTGTGTCGAAGATGAA
ACTTCCTGACTATTTTATGGAGTGGATCAACATTAAAGATGTCTATCTCAACTTTTACCAAAAGAAGGCAACGGGAATGGTGACGATGATGAGACAACTTGAAATACCCT
TGGTGGGAAGCCATCATCTTGGTATAGATGATACAAAGAACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGATGGTGCACATTTGCAGATCACTGCACGTAGGAATCCC
AAATCTCAACATGTTAAGTTTCTTTTTGAGAACCGTATTTAA

mRNA sequence

Show/hide mRNA sequence

AGAATTTTTACATTGAAGGGCAAAATATCTTTAACCGGACCCTCGTATTTTTGGACTATTTTTGGCAATTTCCCGAACTTTTCGTCCATGAATTTAACTATAAAAGGTTT
CTAAAGTTAGTTTTGGAAAAAACTTCAAACTTGAAACCATTTGGGGTATTTTTATAATTTCATAAATATATGTTGCTGCTGCAGAATTCGACCGCTCCAAAGTCCGTCGT
CTTCCCCGGCTCCGGTCGACCGTCGGAGTGTAGACTGAACATTATCCACTCACTTCCGTTCATTTCAGTTCAATGTTTCTGAGAGCTCCGCTGCTTAAGCTTTCATCATT
CTACTCAATCCCATGTCATCCTCTGGTTCCGTTGTCTCTCTCTTCCTCAATTTGTTCTTCTTCTCGCACACCTTTCGCCATCCGATGCCATTCATCTCTCCCCACTGCCC
ACGAACCATCTTCTTCATCTCCCTCTGAATACCCCGATGTGGCGGATAATCGTTGGCGGCCCACGTGTTTGTATTTCACACAGGGCAAGTGCACAATGTTGAATTTTTAT
AAGGAACTCCATTATTTGAGAATTGAAGAACTCTTGTCTTATGTTATGGATGATCCACTCCACATAAAGAAGTTCAATCATGATATCTCCAGGGAGCTTCAGGTAGAAAT
TGCTAGGTCAAACCATATGCGAACTCAGGACATTGATTTTTTTCTGGTGCTTGATTTGGAGGGTAAAGTTGAAATTATTGAGTTTCCAGTCATATTAGTCAATGCCAAGA
CAATGGGTGTGACAGGTTTTTTCCACAGGTTTGTTAGGCCATCAAGAATGAGTGAACAAAGGATAAATGAATACATTGAAGGAAAATACGGCAAGTTTGGAGTTGACCGT
GTCTGGCATGACACAGCCATACTGTACAAGGATGTTATTCAACAGTTCGAAGATTGGCTGGTTCATCATCAGCTATGGAGGAAGGAACTGGGTGGTGTTCTTGATCGAGC
AGCATTTGTGACATGTGGCAACTGGGATATAAAAACTCAGGTCCCACATCAATGTAGTGTGTCGAAGATGAAACTTCCTGACTATTTTATGGAGTGGATCAACATTAAAG
ATGTCTATCTCAACTTTTACCAAAAGAAGGCAACGGGAATGGTGACGATGATGAGACAACTTGAAATACCCTTGGTGGGAAGCCATCATCTTGGTATAGATGATACAAAG
AACATCGTGAGAGTGTTGCAGAGAATGGTTGCTGATGGTGCACATTTGCAGATCACTGCACGTAGGAATCCCAAATCTCAACATGTTAAGTTTCTTTTTGAGAACCGTAT
TTAATGGTGACTAATCTTCATCAAGTTATCTTCAATATTTGTTTGGATGATCTATGGAATGGATCAATCTTAAAATAGCTACAAGAGATCTCATGAGTTGTAGATGTATT
TGTTAATCGGTTCTGATATGTTTAATGTGTTGAAGTTTTAACAATGTGCTTCTCTAATTATCTTCTTTTTATACGAGGGTAGATTTAATTCTTAAATCC

Protein sequence

Show/hide protein sequence

MFLRAPLLKLSSFYSIPCHPLVPLSLSSSICSSSRTPFAIRCHSSLPTAHEPSSSSPSEYPDVADNRWRPTCLYFTQGKCTMLNFYKELHYLRIEELLSYVMDDPLHIKK
FNHDISRELQVEIARSNHMRTQDIDFFLVLDLEGKVEIIEFPVILVNAKTMGVTGFFHRFVRPSRMSEQRINEYIEGKYGKFGVDRVWHDTAILYKDVIQQFEDWLVHHQ
LWRKELGGVLDRAAFVTCGNWDIKTQVPHQCSVSKMKLPDYFMEWINIKDVYLNFYQKKATGMVTMMRQLEIPLVGSHHLGIDDTKNIVRVLQRMVADGAHLQITARRNP
KSQHVKFLFENRI

Clc11G19110 (gene) of Watermelon (cordophanus) v2 genome