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Clc11G19330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G19330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHistidine-rich glycoprotein-like isoform X2
Genome locationClcChr11:29806389..29807329
RNA-Seq ExpressionClc11G19330
SyntenyClc11G19330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064320.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa]9.3e-1865.12Show/hide
Query:  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHH----HHHHDHNHVDKHH
        ++VAT+SIV+V LPMGAEA IP VGPIAQCIQGCT+SLS+LTPGYC +ICGAEY PLT   ++T   HH    HHH  H H + HH
Subjt:  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHH----HHHHDHNHVDKHH

KAE8649837.1 hypothetical protein Csa_012364 [Cucumis sativus]4.2e-1854.31Show/hide
Query:  IVNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETS---------APHH-
        ++N  K+  TSR V IV + T+++ATVSIV+VL PMGA+A IP VGPIAQCIQGCTKSLS+LTPGYC ++CGAEY PL    + T+           HH 
Subjt:  IVNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETS---------APHH-

Query:  ---HHHHDHNHVDKHH
           HHH  H  V+ HH
Subjt:  ---HHHHDHNHVDKHH

KAG6591952.1 hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1050Show/hide
Query:  VNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNH---
        +NS K  +T R+V+IV   T++VA   I+V LLPM AEA +P  G ++QCIQGCTKSL+ LT GYC ++C AE+ PL       SA  HHH HDH+H   
Subjt:  VNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNH---

Query:  -VDKHHIIAD
         VD H  + D
Subjt:  -VDKHHIIAD

KAG6607883.1 hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia]7.4e-0746.91Show/hide
Query:  SMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNH
        +M  I+ A  ++ +VLLPM AEA IPTVG I +CI+ C  SL SL P YCS +C AE+ P          P H H H H H
Subjt:  SMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNH

TrEMBL top hitse value%identityAlignment
A0A5A7VAR8 Histidine-rich glycoprotein-like isoform X24.5e-1865.12Show/hide
Query:  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHH----HHHHDHNHVDKHH
        ++VAT+SIV+V LPMGAEA IP VGPIAQCIQGCT+SLS+LTPGYC +ICGAEY PLT   ++T   HH    HHH  H H + HH
Subjt:  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHH----HHHHDHNHVDKHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTACACCACACAACTTTTCCCTTCATCTTTTGGCCAAACACCTTGAAATAGCCAATCCCTCCTCTCCCCTAACCTTTAAAACACAACAAACCCTTCTCCCCAT
TCTCACCAACCCCTTGTGTAAATTTCAATTTCCCATTGGCAAATCAACACACATCACACACGGAGCCCAAAAAACGGAGAAAAAAGAGGCAACGACGAAGACCATGACGA
CGATCGTGAACTCAGCTAAAGTACCAACAACATCGAGAAAGGTCATGATCGTCTCCATGACAACGATCGTCGTTGCTACCGTTAGCATTGTCGTGGTCTTGCTTCCAATG
GGTGCAGAAGCGCTTATCCCAACCGTCGGTCCAATCGCTCAATGTATCCAAGGGTGCACAAAGTCGCTGTCAAGTTTAACTCCTGGTTATTGCTCGAGTATTTGTGGAGC
TGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTGCCCCTCATCATCATCATCATCATGATCATAACCATGTTGATAAGCATCATATTATTGCTGATGTTATCA
TACCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAGTGGTTATGTATTTCACAATATCCAATAATATTGTAACTGCAACATCCTAAATTAAGAGTTTTGGAAGTATTGATATAATCTTTAATTTCCCCCATGTTGTCTA
CACCACACAACTTTTCCCTTCATCTTTTGGCCAAACACCTTGAAATAGCCAATCCCTCCTCTCCCCTAACCTTTAAAACACAACAAACCCTTCTCCCCATTCTCACCAAC
CCCTTGTGTAAATTTCAATTTCCCATTGGCAAATCAACACACATCACACACGGAGCCCAAAAAACGGAGAAAAAAGAGGCAACGACGAAGACCATGACGACGATCGTGAA
CTCAGCTAAAGTACCAACAACATCGAGAAAGGTCATGATCGTCTCCATGACAACGATCGTCGTTGCTACCGTTAGCATTGTCGTGGTCTTGCTTCCAATGGGTGCAGAAG
CGCTTATCCCAACCGTCGGTCCAATCGCTCAATGTATCCAAGGGTGCACAAAGTCGCTGTCAAGTTTAACTCCTGGTTATTGCTCGAGTATTTGTGGAGCTGAGTATAGG
CCTCTAACAACAAGACATAGAGAGACTTCTGCCCCTCATCATCATCATCATCATGATCATAACCATGTTGATAAGCATCATATTATTGCTGATGTTATCATACCAAGTTA
GAGTGTGTGTTGTGTGTCTTTTTTTTCATTTCCCACTATTATATTATTATTGTTAATAGTGGGATTAATTCATCATATTTGCAGCCATTTGATTTGCTTCTTTTTCTTGT
AAGCACCTTCAAAAACCCATTTGCTTTTTTCTTTTTATCACTGTTGTTTTCACTTGATTTGATTTCAAACAAATTCAAAATTGTTCAAATAAGATTATTCTTCTCTCAAG
ATTATATTAGAGCAACAAGAGAAAAAAATTATCATGTTTTTCTTCCTAGGTAAGGAGAAAA
Protein sequenceShow/hide protein sequence
MLSTPHNFSLHLLAKHLEIANPSSPLTFKTQQTLLPILTNPLCKFQFPIGKSTHITHGAQKTEKKEATTKTMTTIVNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPM
GAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNHVDKHHIIADVIIPS