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Clc11G19450 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G19450
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationClcChr11:29929452..29929889
RNA-Seq ExpressionClc11G19450
SyntenyClc11G19450
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]9.7e-6390.34Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLLQFPLLQ HFRPP+TLLFP VKSHLSVVSI+ P+SQFL +PSHA  P GFALMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]6.5e-5987.59Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLLQFPLLQ HFRPP+TLLFPAVKSHLS+ SI+ P+SQFL +PSHA  PA F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]6.7e-5682.86Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLL+FPLL  H RPP+TL FPA+KSHLSVVSI  P+SQFLR+PSH   PA FALMAK PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        I GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSST
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]2.0e-5582.14Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLL+FPLLQ H RPP+TL FPA+KSHL VVSI  P+SQFLR+PSH   PA FALMAK PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        I GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSS+
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.9e-6390.34Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M ST LLQFPLLQ HFRPP+TL FPAVKSHLSVVSIT P++QFL +PSHA   AGF LMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein3.1e-5987.59Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLLQFPLLQ HFRPP+TLLFPAVKSHLS+ SI+ P+SQFL +PSHA  PA F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-14.7e-6390.34Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLLQFPLLQ HFRPP+TLLFP VKSHLSVVSI+ P+SQFL +PSHA  P GFALMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1FET6 uncharacterized protein LOC1114432991.8e-5480.71Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLL+FPLLQ H RPP+TL FPA+KSHLSVVSI   +SQFLR+PSH   PA FALMAK PK+D++EQKWS+EGS+V+SLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        I GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR RSS+
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like4.0e-5480.69Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLLQFPLLQ   RPP+T LFPA+KSH+SVVSI  PSSQFL +PSH   P  F  MAKSPK+++SEQK+SHEGSV+ESLPNGMFRV+LDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS
        ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R STKD SS
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769473.3e-5682.86Show/hide
Query:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY
        M STNLL+FPLL  H RPP+TL FPA+KSHLSVVSI  P+SQFLR+PSH   PA FALMAK PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGY
Subjt:  MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        I GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSST
Subjt:  ISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.9e-2980Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDS
        EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDS

Q09G11 Translation initiation factor IF-1, chloroplastic1.9e-2980.26Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRS  KDS+
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic4.3e-2980Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic3.2e-3269.39Show/hide
Query:  FLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST
        FL  P   P     +  + +  + + EQKW HEG ++ESLPNGMFRVRLDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRSST
Subjt:  FLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSST

Q94KR9 Translation initiation factor IF-1, chloroplastic2.5e-2978.87Show/hide
Query:  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR
        + EQKW+HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YRLR
Subjt:  TSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein6.8e-2265.79Show/hide
Query:  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS
        P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R+ S
Subjt:  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGCACAAATCTGCTCCAATTCCCTTTACTTCAACCCCACTTCCGGCCACCGGCCACTCTCCTTTTTCCTGCCGTCAAATCCCATCTTTCCGTCGTCTCAATCAC
TCTTCCCAGCTCCCAATTCCTCCGTAGCCCTTCCCATGCTCCGCGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATGGAGCC
ATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTTATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTG
CGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACTTCGAAGCAGTACTAAAGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGCACAAATCTGCTCCAATTCCCTTTACTTCAACCCCACTTCCGGCCACCGGCCACTCTCCTTTTTCCTGCCGTCAAATCCCATCTTTCCGTCGTCTCAATCAC
TCTTCCCAGCTCCCAATTCCTCCGTAGCCCTTCCCATGCTCCGCGACCGGCAGGGTTCGCTCTCATGGCAAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATGGAGCC
ATGAAGGCTCCGTCGTTGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTTATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTG
CGTATTTTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACTTCGAAGCAGTACTAAAGATTCATCTTCATGA
Protein sequenceShow/hide protein sequence
MLSTNLLQFPLLQPHFRPPATLLFPAVKSHLSVVSITLPSSQFLRSPSHAPRPAGFALMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFV
RILPGDRVRVEVSRYDSTKGRIVYRLRSSTKDSSS