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Clc11G19680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G19680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAC domain protein
Genome locationClcChr11:30174795..30175663
RNA-Seq ExpressionClc11G19680
SyntenyClc11G19680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036871.1 uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa]4.3e-3887.76Show/hide
Query:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
        MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLMA+PGD+ RRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Subjt:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES

KAG6607862.1 hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2470.41Show/hide
Query:  MPTIFQSQPQPRRTTSVAG--REACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA
        MPTIFQSQ QP    S AG  RE  R R+ RS CRS SFGG+ RGGRN+ A  GDK RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLSNMSMA
Subjt:  MPTIFQSQPQPRRTTSVAG--REACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA

KAG7024857.1 hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-3176.24Show/hide
Query:  MPTIFQSQPQPRRTTSV---AGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAE
        MPTIFQSQPQP R  S+   AGRE    R+ RSTCRSFSF GMVR GRN+M   GDKFRRNQG REVLRRALMPP+R+PTLRW+NFRPTPSRLSNMSMAE
Subjt:  MPTIFQSQPQPRRTTSV---AGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAE

Query:  S
        +
Subjt:  S

KGN60027.2 hypothetical protein Csa_001878 [Cucumis sativus]1.9e-3887.76Show/hide
Query:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
        MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Subjt:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES

XP_011652880.1 uncharacterized protein LOC105435142 [Cucumis sativus]8.6e-3988.78Show/hide
Query:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
        MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Subjt:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES

TrEMBL top hitse value%identityAlignment
A0A0A0LD23 Uncharacterized protein4.2e-3988.78Show/hide
Query:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
        MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Subjt:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES

A0A4U5R551 Uncharacterized protein1.5e-1263.77Show/hide
Query:  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA
        RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTPSRLSNMSMA
Subjt:  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA

A0A5A7T5L7 Uncharacterized protein2.1e-3887.76Show/hide
Query:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
        MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLMA+PGD+ RRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Subjt:  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES

A0A6M2EHA0 Uncharacterized protein1.5e-1263.77Show/hide
Query:  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA
        RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTPSRLSNMSMA
Subjt:  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA

A0A6N2MHB8 Uncharacterized protein5.1e-1350Show/hide
Query:  MPTIFQSQ-----PQPRRTTSVAGREACRGRTA-------RSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPS
        M TI Q Q     P P R +   G  A R   A       RSTC   +  G VR  ++   VP D+ RR+Q +RE+LRRAL PP+RR TLRW NF+PTPS
Subjt:  MPTIFQSQ-----PQPRRTTSVAGREACRGRTA-------RSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPS

Query:  RLSNMSMA
        RLSNMSMA
Subjt:  RLSNMSMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G15518.1 unknown protein5.2e-1043.82Show/hide
Query:  PQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDK---FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMS
        P    T  +  R    G   R  C      G  +  R+   VP D+    + + GSREVLRRAL PP RR  LRW+NFRPTPSRL  MS
Subjt:  PQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDK---FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTT
TGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGCGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGCA
GGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGAGTTAA
mRNA sequenceShow/hide mRNA sequence
CTTGGGAGGAAGTTGAATAATTGAGAGAAGAGGTTTGCAGTTTCCAAGTTGTTTGGTTATATGGAGAAACGGCTTAAGGACCAAGCAATGAAATCAAAAACCGAGTGCGC
CATCAGCCAGTCAAGTCAATGCCCTCCAAATTTGGTCAACTTCTTTGAAAATTCCAACCATTTATTTTTCCCCTTAAATACAGAATCAATACCCACTTTTCTCCAAAAGT
TCCATCTGGGTTTTGAATCTTTTGATCATTCTAATTCAAAACTCCAAATTTTTTACTAAAATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGT
CGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGCGGTGCCCGGAGATA
AGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGCAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTT
TCTAATATGTCTATGGCGGAGAGTTAATTTTTTTTTTTTTTTTTGATTTTTTTGGATTATTCTTTGATTCAAATTCAACGAATTTCTGCGGTATGTTTGGAGAATCTGTG
GACGATTCAGTTCCTAATTTTTGGAGTGAAATTACGGAATTGTTTGTGGGTTAGTTTGTTAACTGTTCATCCATTTTTTGGTGTAATACTTTTTCTAAAAAGTTATTGAT
CTAAATTCTTATATGAAACGAAATTAAGTTAATTAGAAATTTGCGGAAAGAAGGTCATTGAGAAGAGGAATTGATATATAACTGACAATAAAAAAAAAT
Protein sequenceShow/hide protein sequence
MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES