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Clc11G19900 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G19900
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDynein light chain
Genome locationClcChr11:30360445..30361342
RNA-Seq ExpressionClc11G19900
SyntenyClc11G19900
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146843.1 dynein light chain 2, cytoplasmic [Cucumis sativus]2.4e-4486.61Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP
        GKAI+GETDML+AMQQDAL+LAAKALDSFDVTEATDIA FIKKEFDRI+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS++++  PEP
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP

Query:  T-QFSVMD-TLK
        T  FS+MD TLK
Subjt:  T-QFSVMD-TLK

XP_008454627.1 PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo]2.4e-4483.93Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP
        GKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIA FIKKEFDR YGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E++  P+P
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP

Query:  T--QFSVMDTLK
        +   FS++DTLK
Subjt:  T--QFSVMDTLK

XP_022941140.1 dynein light chain 2, cytoplasmic-like [Cucurbita moschata]3.5e-4384.26Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ
        GKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIA FIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A ++  P PT 
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ

Query:  FSVMDTLK
        F+  +TLK
Subjt:  FSVMDTLK

XP_022976611.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]3.5e-4382.41Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ
        GKA+IGETDMLQAMQQ+ALDLAAKALDSFDVTE TDIA FIKKEFD +YGGGWQCIVGTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ SE  +P PTQ
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ

Query:  FSVMDTLK
        FS+++T+K
Subjt:  FSVMDTLK

XP_038899068.1 dynein light chain 2, cytoplasmic [Benincasa hispida]3.2e-4992.73Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS-EEKEPEPT
        GKAIIGETDMLQAMQQDAL+LAAKALDSFDVTEATDIA FIKKEFD+IYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS EE++P+PT
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS-EEKEPEPT

Query:  QFSVMDTLKA
        QFSVM+TLKA
Subjt:  QFSVMDTLKA

TrEMBL top hitse value%identityAlignment
A0A1S3BZU7 Dynein light chain1.2e-4483.93Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP
        GKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIA FIKKEFDR YGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E++  P+P
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP

Query:  T--QFSVMDTLK
        +   FS++DTLK
Subjt:  T--QFSVMDTLK

A0A5A7T1H5 Dynein light chain1.2e-4483.93Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP
        GKAIIGETDML+AMQQDAL+LA+KALDSFDVTEATDIA FIKKEFDR YGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAAS+E++  P+P
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKE--PEP

Query:  T--QFSVMDTLK
        +   FS++DTLK
Subjt:  T--QFSVMDTLK

A0A6J1FSQ1 Dynein light chain1.7e-4384.26Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ
        GKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIA FIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A ++  P PT 
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ

Query:  FSVMDTLK
        F+  +TLK
Subjt:  FSVMDTLK

A0A6J1IHC9 Dynein light chain1.7e-4382.41Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ
        GKA+IGETDMLQAMQQ+ALDLAAKALDSFDVTE TDIA FIKKEFD +YGGGWQCIVGTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ SE  +P PTQ
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ

Query:  FSVMDTLK
        FS+++T+K
Subjt:  FSVMDTLK

A0A6J1J2G7 Dynein light chain8.4e-4383.33Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ
        GKAI+GETDMLQAMQQDALDLAAKALD FDVTEATDIA FIKKEFDR +GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A ++  P PT 
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEPTQ

Query:  FSVMDTLK
         +  +TLK
Subjt:  FSVMDTLK

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm4.4e-1751.69Show/hide
Query:  MDVGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M   KA+I   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MDVGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

O96860 Dynein light chain 2, cytoplasmic2.0e-1754.12Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        KA+I   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q22799 Dynein light chain 1, cytoplasmic7.6e-1752.94Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        KA+I   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q24117 Dynein light chain 1, cytoplasmic4.4e-1752.94Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        KA+I   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q3MHR3 Dynein light chain 2, cytoplasmic9.9e-1751.76Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        KA+I   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.3e-1950.56Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA
        GKA++ ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+VG++FG F TH  G FIYF + +L  L+F+G++
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA

AT3G16120.1 Dynein light chain type 1 family protein1.0e-2154.55Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS
        GKA + ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  YG GWQC+VGT+FG F TH  G FIYF +G+L  L+F+G+
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS

AT4G15930.1 Dynein light chain type 1 family protein6.2e-1444.71Show/hide
Query:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        +A+I   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +FGS+VTH    F+YF +   A+LLF+
Subjt:  KAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

AT4G27360.1 Dynein light chain type 1 family protein7.0e-3471.43Show/hide
Query:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEP
        GKA++G+TDM Q M++DAL LA+KALD FDVTE T IA FIKKEFDR YG GWQCIVGT FGSFVTHC GCFI+F VGSL ILLF+GS      EP P
Subjt:  GKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEKEPEP

AT5G20110.1 Dynein light chain type 1 family protein2.1e-1450Show/hide
Query:  DMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        DM   MQ  A   A   LDS +   +  +A  +KKEFD+ YG  W CIVG+ FGSFVTH  GCFIYF +  L +LLF+
Subjt:  DMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACATATTTGGCATGATTCTGGGAAGATCCGTTAGTGACCACAGAGAGAAGGATATGGACGTGGGGAAAGCAATCATCGGAGAGACGGACATGTTGCAGGCCAT
GCAACAAGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACCGACATTGCCTGTTTCATTAAAAAGGAATTTGACAGGATATACGGGG
GAGGATGGCAATGCATAGTGGGCACTGATTTTGGATCATTTGTGACACATTGTTTTGGGTGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGC
TCTGCTGCCTCAGAAGAAAAAGAACCTGAGCCAACTCAATTTTCTGTTATGGACACTCTAAAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGACATATTTGGCATGATTCTGGGAAGATCCGTTAGTGACCACAGAGAGAAGGATATGGACGTGGGGAAAGCAATCATCGGAGAGACGGACATGTTGCAGGCCAT
GCAACAAGACGCTCTGGACCTTGCGGCTAAGGCACTTGACAGTTTTGATGTCACTGAAGCCACCGACATTGCCTGTTTCATTAAAAAGGAATTTGACAGGATATACGGGG
GAGGATGGCAATGCATAGTGGGCACTGATTTTGGATCATTTGTGACACATTGTTTTGGGTGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAATTTTGCTCTTTAGGGGC
TCTGCTGCCTCAGAAGAAAAAGAACCTGAGCCAACTCAATTTTCTGTTATGGACACTCTAAAAGCTTGA
Protein sequenceShow/hide protein sequence
MTDIFGMILGRSVSDHREKDMDVGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEATDIACFIKKEFDRIYGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRG
SAASEEKEPEPTQFSVMDTLKA