CuGenDBv2

Gene ID	Clc11G19990
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mediator of RNA polymerase II transcription subunit 26
Genome location	ClcChr11:30440051..30440629
RNA-Seq Expression	Clc11G19990
Synteny	Clc11G19990
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591229.1 hypothetical protein SDJN03_13575, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-36

85.86

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYGTEEGQQ+SLQKKPASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

XP_008452943.1 PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]

1.2e-32

80.2

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK--PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYF
        MENKQ++EME    RRE+SKK EQ+PP+YISPM+PLTESAYGGGMYGTEEG Q SLQ K  PAS TQSADG VEAEMK KH PPPSSGDRDIDITGQSYF
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK--PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYF

Query:  Q
        Q
Subjt:  Q

XP_022132786.1 uncharacterized protein LOC111005558 [Momordica charantia]

1.4e-33

81.82

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QK+EME    RREE+KK EQQPP  ISPM+PLTESAYGGGMYG EEGQQ+ L+KKPASDTQSADG VEA MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

XP_022936823.1 uncharacterized protein LOC111443294 [Cucurbita moschata]

3.9e-36

84.85

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKPASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

XP_038899828.1 uncharacterized protein LOC120087055 [Benincasa hispida]

1.0e-36

85.86

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME+ QK+EME    RREESKK EQQPPHYISPMKPLTESAYGGGMYG EEG++RSLQKKPAS+TQSADG VE EMKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L393 Uncharacterized protein

1.1e-28

76.47

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEE-GQQRSLQ--KKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSY
        MENKQK+EME    RREESKK EQ+PP+YIS M+PLTE AYGGGMYGT++ G Q SLQ  K PAS TQSADG V AEMK KH PPPSSGDRDIDITGQSY
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEE-GQQRSLQ--KKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSY

Query:  FQ
        FQ
Subjt:  FQ

A0A1S3BV26 uncharacterized protein LOC103493802

5.6e-33

80.2

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK--PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYF
        MENKQ++EME    RRE+SKK EQ+PP+YISPM+PLTESAYGGGMYGTEEG Q SLQ K  PAS TQSADG VEAEMK KH PPPSSGDRDIDITGQSYF
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKK--PASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYF

Query:  Q
        Q
Subjt:  Q

A0A6J1BT98 uncharacterized protein LOC111005558

6.7e-34

81.82

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QK+EME    RREE+KK EQQPP  ISPM+PLTESAYGGGMYG EEGQQ+ L+KKPASDTQSADG VEA MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

A0A6J1FEB2 uncharacterized protein LOC111443294

1.9e-36

84.85

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKPASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

A0A6J1IJZ9 uncharacterized protein LOC111476971

1.9e-36

84.85

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Query:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ
        ME  QKVEME    RREE+KK EQ+PPHYISPM+PLTESAYGGGMYG EEGQQ+SLQKKPASDTQSADG VE+ MKPKHAPPPSSGDRDIDITGQSYFQ
Subjt:  MENKQKVEME----RREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G42290.1 transcription activator-related

1.6e-16

45.45

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Query:  MENKQKVEMERREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRS--------------LQKKPASDTQSADGAVEAE-MKPKHAPPPSSGDRD
        ME + K E E   +  +  Q  P YIS M+P+T  AYGGG+YG ++ ++ +               Q+ PASDTQSADG  E + + PKH  P SSGDRD
Subjt:  MENKQKVEMERREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRS--------------LQKKPASDTQSADGAVEAE-MKPKHAPPPSSGDRD

Query:  IDITGQSYFQ
        +DITGQSY Q
Subjt:  IDITGQSYFQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAATAAGCAGAAGGTGGAGATGGAGAGGCGAGAAGAATCGAAGAAGACGGAGCAACAACCGCCGCACTATATTTCTCCGATGAAACCATTGACGGAAAGTGCTTA
CGGCGGAGGAATGTACGGCACCGAGGAGGGCCAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGACACGCAGAGCGCCGATGGAGCTGTTGAAGCGGAAATGAAGCCGA
AGCATGCGCCTCCGCCGTCCTCCGGCGACAGAGACATCGACATCACCGGGCAATCGTACTTCCAGTAG

mRNA sequence

Show/hide mRNA sequence

TTTTTCGTCAAATTACCAAAATGGAAAATAAGCAGAAGGTGGAGATGGAGAGGCGAGAAGAATCGAAGAAGACGGAGCAACAACCGCCGCACTATATTTCTCCGATGAAA
CCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAGGGCCAACAGCGAAGCCTGCAGAAGAAACCTGCGAGCGACACGCAGAGCGCCGATGGAGCTGT
TGAAGCGGAAATGAAGCCGAAGCATGCGCCTCCGCCGTCCTCCGGCGACAGAGACATCGACATCACCGGGCAATCGTACTTCCAGTAGCCTGCAAAGTTCGTGGCTGCCG
ATTGCGTTTTGTATATGTGTTTAATAATGGCGAAAGGCAGTTTGTATCGTTTCTTTACTTGATTGTGCGTTTTCAATGAAAAACAGAAATTAAGGTATGTTTCTTAAAAA
CATTAAGAAGGCATGGACTCTCTCCAAAGTAAAGGCAATAATTAAAATTAACTGTTGATATGAAATATATATTATATTTGTACATTAGAGGGTTTGTCATTATATTATGA
ATTAATTGATATCTATGATCTTTTTTTGT

Protein sequence

Show/hide protein sequence

MENKQKVEMERREESKKTEQQPPHYISPMKPLTESAYGGGMYGTEEGQQRSLQKKPASDTQSADGAVEAEMKPKHAPPPSSGDRDIDITGQSYFQ

Clc11G19990 (gene) of Watermelon (cordophanus) v2 genome