; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G20290 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20290
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLocalized to the inner membrane of the chloroplast
Genome locationClcChr11:30631658..30634401
RNA-Seq ExpressionClc11G20290
SyntenyClc11G20290
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0031090 - organelle membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591206.1 hypothetical protein SDJN03_13552, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4358.71Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADK LGSVSPTSLLLNPGWVGKA LST RRPLSVQAAYR+                          N+R         N+     SN       
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
           A  F+  +++  +  G     +  +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPPNGVAVNSDE+EPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

KAG7037964.1 hypothetical protein SDJN02_01597, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-4357.14Show/hide
Query:  MPGSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQI
        +PGSNLKTADKR GSVSPT  LLNPGWVGKA LSTFRRPLSVQAAY            ++ G  ++  I                               
Subjt:  MPGSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQI

Query:  CDQAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVE
                FI  +++  +  G     +  +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED PNGVAVNSDEVE
Subjt:  CDQAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVE

Query:  PAI
        PAI
Subjt:  PAI

XP_022941515.1 uncharacterized protein LOC111446794 [Cucurbita moschata]5.3e-4357.71Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADKR GSVSPT LLLNPGWVGKA LSTFRRPLSVQAAY            ++ G  ++  I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              FI  +++  +  G     +  +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED PNGVAVNSDEVEPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

XP_023521457.1 uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]4.1e-4357.71Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADKR GSVSPT LLLNPGWVGKA LSTFRRPLSVQAAY            ++ G  ++  I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              FI  +++  +  G     +  +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED PNGVAVNSDEVEPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

XP_038900139.1 uncharacterized protein LOC120087268 [Benincasa hispida]3.7e-4458.42Show/hide
Query:  PGSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQIC
        PGSNLKTA+K LGSVSPTSLLL PGWVGK  LSTFRRPLSVQAAY            ++ G  +   I                                
Subjt:  PGSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQIC

Query:  DQAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEP
               FI  +++  +  G     +  +ISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEP
Subjt:  DQAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEP

Query:  AI
        AI
Subjt:  AI

TrEMBL top hitse value%identityAlignment
A0A1S3BV81 uncharacterized protein LOC1034938442.8e-4256.72Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKT DKRLGS+SPTSL+L+PGWVGKA LSTFRRPLSVQAAY            ++ G  +   I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              FI  +++  +  G     +  +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLR EDPPNGVAVNSDEVE A
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

A0A6J1FC82 uncharacterized protein LOC1114427782.2e-4256.22Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADK LGSVSPTSLLLNPGWVGKA LST RRPLSVQAAY            ++ G  +   I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              F+  +++  +  G     +  +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPPNGVAVNSDE+EPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

A0A6J1FTW3 uncharacterized protein LOC1114467942.6e-4357.71Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADKR GSVSPT LLLNPGWVGKA LSTFRRPLSVQAAY            ++ G  ++  I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              FI  +++  +  G     +  +ISKALAG DRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRTED PNGVAVNSDEVEPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

A0A6J1IGB6 uncharacterized protein LOC1114744369.8e-4356.22Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADK LGSVSPTSLLLNPGWVGKA LST RRPLSVQAAY            +++G  +   I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              F+  +++  +  G     +  +ISKALAG DRK+LMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVS+QLRT+DPPNGVAVNSDE+EPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

A0A6J1IT36 uncharacterized protein LOC1114803665.7e-4357.21Show/hide
Query:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD
        GSNLKTADKR GSVSPT LLLNPGWVGKA LSTFRRPLSVQAAY            ++ G  ++  I                                 
Subjt:  GSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICD

Query:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA
              FI  +++  +  G     +  +ISKALAG DRKDLMRKLPKFIYDEEKA+EKTRKVLAQKIEQLNSAIDEVS+QLRTED PNGVAVNSDEVEPA
Subjt:  QAWAFKFI-VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPA

Query:  I
        I
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast.1.1e-2580.28Show/hide
Query:  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVE
        +ISKA+AGADRKDLMRKLPKFIYDEEKALEKTRKVLA+KI QLNSAID+VS+QL++ED PNG A+++DE+E
Subjt:  EISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGATCAAATTTGAAAACTGCCGATAAACGTTTGGGGAGCGTGTCCCCTACCAGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCGAATCTCTCTACATTTAG
GCGGCCACTTTCAGTTCAAGCTGCATATAGATTTCTTGAACAGGTAAGCTTATCATTGGGGTTTGCAGAAACTGGAAATCCAACTACTGTACAAATCCAAAATGCATGTG
TTAACATCAGGCAGTCGCTAGTCAAGAGCCAAGAATCTAACCAATTTGAACTGAGCCAGTCCAATTGGTTCAAACAGATTTGTGACCAAGCATGGGCCTTTAAGTTTATT
GTGTACATTATGACAGTGATGGCGGACGGTCAAGCAATGCAGGCATTTTTATTGGAGATTAGCAAGGCACTTGCCGGAGCAGACCGAAAAGATTTGATGAGGAAACTTCC
CAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTACTGGCACAGAAGATCGAACAGTTGAACTCTGCAATTGATGAGGTTTCTGCTCAGCTTCGCA
CAGAGGATCCCCCAAATGGAGTGGCTGTGAACTCTGACGAAGTTGAACCTGCCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGATCAAATTTGAAAACTGCCGATAAACGTTTGGGGAGCGTGTCCCCTACCAGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCGAATCTCTCTACATTTAG
GCGGCCACTTTCAGTTCAAGCTGCATATAGATTTCTTGAACAGGTAAGCTTATCATTGGGGTTTGCAGAAACTGGAAATCCAACTACTGTACAAATCCAAAATGCATGTG
TTAACATCAGGCAGTCGCTAGTCAAGAGCCAAGAATCTAACCAATTTGAACTGAGCCAGTCCAATTGGTTCAAACAGATTTGTGACCAAGCATGGGCCTTTAAGTTTATT
GTGTACATTATGACAGTGATGGCGGACGGTCAAGCAATGCAGGCATTTTTATTGGAGATTAGCAAGGCACTTGCCGGAGCAGACCGAAAAGATTTGATGAGGAAACTTCC
CAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAGTACTGGCACAGAAGATCGAACAGTTGAACTCTGCAATTGATGAGGTTTCTGCTCAGCTTCGCA
CAGAGGATCCCCCAAATGGAGTGGCTGTGAACTCTGACGAAGTTGAACCTGCCATTTGAAAGTATCGTCTCATCACGTTGGTCTTCCTGCACCGCCCACGACTCTGGGAC
TCGGAATAATAGTTAATATTCTAGCTATTATCTTTGATTTTCTCTTTTTTGAACATTTGAATCCGAGCTTTGATGTGCAATATCCATCCTCGCATAATGTGTTGCTTTGA
TCGCTCAAATGCTCCATATAAAGTTGAATAGATTTGTAGAAGAGCATTCTTGCTGTGTTTCCTATTTTGTACACGAACAACAGGCATTGTTTTGTATCTGAAAGCCACAT
ATTTCATCCCTTCCGCCTACTATTTGCATTTTTTTTTATTCTTCTAGCACTGTTGGGTCACCACTCGCCAGCCA
Protein sequenceShow/hide protein sequence
MPGSNLKTADKRLGSVSPTSLLLNPGWVGKANLSTFRRPLSVQAAYRFLEQVSLSLGFAETGNPTTVQIQNACVNIRQSLVKSQESNQFELSQSNWFKQICDQAWAFKFI
VYIMTVMADGQAMQAFLLEISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSAQLRTEDPPNGVAVNSDEVEPAI