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Clc11G20340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLate embryogenesis abundant protein group 8 protein
Genome locationClcChr11:30654348..30654967
RNA-Seq ExpressionClc11G20340
SyntenyClc11G20340
Gene Ontology termsNA
InterPro domainsIPR018930 - Late embryogenesis abundant protein, LEA-18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064662.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa]4.8e-3489.77Show/hide
Query:  EEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        EEQ Q QMMGK E+KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGGTDAPTLSGSG+PEV+PTTIDVVTKQGLI
Subjt:  EEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

KAE8649966.1 hypothetical protein Csa_012992 [Cucumis sativus]6.3e-3485.87Show/hide
Query:  MSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        MSN EEQ Q QMMGK E+KAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPN   GGGTDAPTLSGSG PEV+PTTID+VTKQGLI
Subjt:  MSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

XP_022135734.1 uncharacterized protein LOC111007621 [Momordica charantia]1.0e-3178.35Show/hide
Query:  EKMSNSEEQPQQQMMGKR-EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHG-GGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP
        E+ + ++ QPQ + MGKR E+KA VE+LLPLESSPYVKYKDLEEYKR+GYGAEGHLEPKPN G GGGGTDAPTLSG+GFPEVKP+TIDV T QGLIP
Subjt:  EKMSNSEEQPQQQMMGKR-EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHG-GGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP

XP_022937316.1 uncharacterized protein LOC111443639 [Cucurbita moschata]9.4e-3078.72Show/hide
Query:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        MSNSEE  Q QQQ++ ++E+K  VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGGTDAPTLSGSGFPEVKP TID VT  GL+
Subjt:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

XP_023535424.1 uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]1.9e-3079.79Show/hide
Query:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        MSNSEE  Q QQQ++ ++E+KA VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGGTDAPTLSGSGFPEVKP TID VT  GL+
Subjt:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

TrEMBL top hitse value%identityAlignment
A0A0A0L5Y6 Uncharacterized protein4.0e-4262.2Show/hide
Query:  MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHGHNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPL
        MH HRNRQPPPRSFF                             E RAGQ GAELLETHGHN  LYLR+M                  E+KAPVEDLLPL
Subjt:  MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHGHNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPL

Query:  ESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        ESSPYVKYKDLEEYKRKGYG EGHL PKPN   GGGTDAPTLSGSG PEV+PTTID+VTKQGLI
Subjt:  ESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

A0A5A7V8I8 Late embryogenesis abundant protein group 8 protein2.3e-3489.77Show/hide
Query:  EEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        EEQ Q QMMGK E+KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGGTDAPTLSGSG+PEV+PTTIDVVTKQGLI
Subjt:  EEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

A0A6J1C2A9 uncharacterized protein LOC1110076214.9e-3278.35Show/hide
Query:  EKMSNSEEQPQQQMMGKR-EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHG-GGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP
        E+ + ++ QPQ + MGKR E+KA VE+LLPLESSPYVKYKDLEEYKR+GYGAEGHLEPKPN G GGGGTDAPTLSG+GFPEVKP+TIDV T QGLIP
Subjt:  EKMSNSEEQPQQQMMGKR-EDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHG-GGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP

A0A6J1FA12 uncharacterized protein LOC1114436394.6e-3078.72Show/hide
Query:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI
        MSNSEE  Q QQQ++ ++E+K  VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN   GGGTDAPTLSGSGFPEVKP TID VT  GL+
Subjt:  MSNSEE--QPQQQMMGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLI

A0A7J7C4J8 Uncharacterized protein2.2e-1654.35Show/hide
Query:  MSNSEEQPQQQMMGKRED-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGL
        MSN  EQ  Q+   + E  K  V + LP+ESSPYVKY +LE+YKRK YG EGHL   PN GGGGGTDAPT+SGSG  + K   +D   + G+
Subjt:  MSNSEEQPQQQMMGKRED-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G23110.1 Late embryogenesis abundant protein, group 61.3e-0842.68Show/hide
Query:  KREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLS-----GSGFPEVKPTTIDVVTKQGL
        ++E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK    GGG TDAPT S     G G      ++ D + +QG+
Subjt:  KREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLS-----GSGFPEVKPTTIDVVTKQGL

AT2G23110.2 Late embryogenesis abundant protein, group 61.3e-0842.68Show/hide
Query:  KREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLS-----GSGFPEVKPTTIDVVTKQGL
        ++E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK    GGG TDAPT S     G G      ++ D + +QG+
Subjt:  KREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLS-----GSGFPEVKPTTIDVVTKQGL

AT2G23120.1 Late embryogenesis abundant protein, group 61.6e-0664.29Show/hide
Query:  SPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSG
        SPY+    LE+YK K YGAEGH EP P   GGG TDAPT SG
Subjt:  SPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSG

AT2G33690.1 Late embryogenesis abundant protein, group 62.1e-1154.69Show/hide
Query:  MGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFP
        M K E+K      LPLE+SPY KY+D+E+YK+  YG  GH + KP H GGG TDAPT SG   P
Subjt:  MGKREDKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGACACAGAAACAGACAGCCACCGCCACGCAGCTTCTTCTTCTTCTTCTTCTTGGGTCCCCTCTGCATTAATCATCGGTCACTTTCAATCCTCAACTGCCAGTT
TAGTTTGTGGTTGTGGGGCTCAGAGGGGAGAGCGGGTCAAATGGGAGCTGAACTTTTGGAAACACATGGACATAATTGCTCCCTTTATTTAAGGGTTATGGAGAAAATGT
CGAATAGCGAAGAGCAACCACAGCAGCAAATGATGGGGAAGAGAGAAGATAAGGCTCCGGTGGAAGATTTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGAC
TTGGAAGAGTACAAAAGGAAAGGTTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAATCACGGCGGCGGCGGCGGCACTGATGCACCCACCTTGTCCGGCAGCGGCTT
CCCGGAGGTGAAGCCCACCACCATTGACGTCGTCACCAAACAAGGCCTTATTCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGACACAGAAACAGACAGCCACCGCCACGCAGCTTCTTCTTCTTCTTCTTCTTGGGTCCCCTCTGCATTAATCATCGGTCACTTTCAATCCTCAACTGCCAGTT
TAGTTTGTGGTTGTGGGGCTCAGAGGGGAGAGCGGGTCAAATGGGAGCTGAACTTTTGGAAACACATGGACATAATTGCTCCCTTTATTTAAGGGTTATGGAGAAAATGT
CGAATAGCGAAGAGCAACCACAGCAGCAAATGATGGGGAAGAGAGAAGATAAGGCTCCGGTGGAAGATTTGCTGCCATTGGAGAGCAGTCCGTACGTGAAATACAAAGAC
TTGGAAGAGTACAAAAGGAAAGGTTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCCAATCACGGCGGCGGCGGCGGCACTGATGCACCCACCTTGTCCGGCAGCGGCTT
CCCGGAGGTGAAGCCCACCACCATTGACGTCGTCACCAAACAAGGCCTTATTCCCTGA
Protein sequenceShow/hide protein sequence
MHRHRNRQPPPRSFFFFFFLGPLCINHRSLSILNCQFSLWLWGSEGRAGQMGAELLETHGHNCSLYLRVMEKMSNSEEQPQQQMMGKREDKAPVEDLLPLESSPYVKYKD
LEEYKRKGYGAEGHLEPKPNHGGGGGTDAPTLSGSGFPEVKPTTIDVVTKQGLIP