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Clc11G20350 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20350
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA helicase
Genome locationClcChr11:30655058..30657007
RNA-Seq ExpressionClc11G20350
SyntenyClc11G20350
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4267529.1 unnamed protein product [Prunus armeniaca]6.0e-1078.72Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSS
        MALMRGEPLV KLAV AKY+VLPGAM AAL+YSPPDY   KND KS+
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSS

KAG7024085.1 hypothetical protein SDJN02_12898, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-0981.4Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKND
        MALMRGEPLVRKLAVFAKY VLP AMAAAL+YSPPDY ++ +D
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKND

KAG7037970.1 hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-1390.91Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDD
        MALM+GEPLVRKLAVFAKY+VLPGAMAAALVYSPPDY Y+KNDD
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDD

KGN55532.1 hypothetical protein Csa_011995 [Cucumis sativus]1.2e-1078Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYK---NDDKSS
        MALM+GEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY+Y K    DDKSS
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYK---NDDKSS

PSR99489.1 DNA helicase [Actinidia chinensis var. chinensis]1.1e-0870.83Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN
        M  MRGEPLV KLAV AKY VLPGAM AAL+YSPPDY Y K  D+ S+
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN

TrEMBL top hitse value%identityAlignment
A0A0A0L4N8 Uncharacterized protein5.8e-1178Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYK---NDDKSS
        MALM+GEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY+Y K    DDKSS
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYK---NDDKSS

A0A2R6PZ99 DNA helicase5.4e-0970.83Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN
        M  MRGEPLV KLAV AKY VLPGAM AAL+YSPPDY Y K  D+ S+
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN

A0A6A4L8H6 Uncharacterized protein (Fragment)2.7e-0872.92Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN
        MA MRGEPLV KLAV AKY VLPGAM AAL+YSPPDYV  K  D +S+
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSSN

A0A6J5TUT5 Uncharacterized protein2.9e-1078.72Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSS
        MALMRGEPLV KLAV AKY+VLPGAM AAL+YSPPDY   KND KS+
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDDKSS

A0A7J6E203 Uncharacterized protein1.2e-0870.45Show/hide
Query:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDD
        MA ++GEPL+RKLA+ +KY VLPGAM AALVYSPPD+VYY N++
Subjt:  MALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVYYKNDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTGCATCCTGATTCAAGAACGTCATTCCTTCCTGCCATTCTTCTTCTTTTTTTATCTCAAGAACTCAAAAGCCAAGCTTGTTCTTGTAGGATAGCAGTTGTTTC
AAGTACTATATTGAAAATATCACATTTTTCTTCATGCCTATTGGCTATTGCCACCATCAGCTTCCAAGTTCTGGATCCTTACGGTGAAATCTGCAGAACAATAATGGCGC
TGATGAGAGGAGAACCCCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACCTTGTTCTTCCAGGAGCCATGGCCGCCGCTCTCGTTTACTCTCCTCCCGATTACGTGTAC
TACAAGAATGACGATAAGTCTTCCAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTATTGCATCCTGATTCAAGAACGTCATTCCTTCCTGCCATTCTTCTTCTTTTTTTATCTCAAGAACTCAAAAGCCAAGCTTGTTCTTGTAGGATAGCAGTTGTTTC
AAGTACTATATTGAAAATATCACATTTTTCTTCATGCCTATTGGCTATTGCCACCATCAGCTTCCAAGTTCTGGATCCTTACGGTGAAATCTGCAGAACAATAATGGCGC
TGATGAGAGGAGAACCCCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACCTTGTTCTTCCAGGAGCCATGGCCGCCGCTCTCGTTTACTCTCCTCCCGATTACGTGTAC
TACAAGAATGACGATAAGTCTTCCAACTAG
Protein sequenceShow/hide protein sequence
MLLHPDSRTSFLPAILLLFLSQELKSQACSCRIAVVSSTILKISHFSSCLLAIATISFQVLDPYGEICRTIMALMRGEPLVRKLAVFAKYLVLPGAMAAALVYSPPDYVY
YKNDDKSSN