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Clc11G20450 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20450
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDEAD-box ATP-dependent RNA helicase 42
Genome locationClcChr11:30700273..30702435
RNA-Seq ExpressionClc11G20450
SyntenyClc11G20450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058146.1 DEAD-box ATP-dependent RNA helicase 42 [Cucumis melo var. makuwa]1.5e-0440.54Show/hide
Query:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIVIDELCRRKNNGVLKSGGSII-WHS
        WLSDG YGAPPFALVFQTS  LL+LI   +G      L+   CC  S +  F    ++L +S N+   P       I   CR     V+KSG  +  + +
Subjt:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIVIDELCRRKNNGVLKSGGSII-WHS

Query:  RAWSEEIKTKV
         AW++EIK  V
Subjt:  RAWSEEIKTKV
TrEMBL top hitse value%identityAlignment
A0A5A7UVE6 DEAD-box ATP-dependent RNA helicase 427.3e-0540.54Show/hide
Query:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIVIDELCRRKNNGVLKSGGSII-WHS
        WLSDG YGAPPFALVFQTS  LL+LI   +G      L+   CC  S +  F    ++L +S N+   P       I   CR     V+KSG  +  + +
Subjt:  WLSDGKYGAPPFALVFQTS--LLNLINAPAGQ-----LYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIVIDELCRRKNNGVLKSGGSII-WHS

Query:  RAWSEEIKTKV
         AW++EIK  V
Subjt:  RAWSEEIKTKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTACTTGAATCCTTCTGCTGCTGGAATATGCACGTTTCACGTGCTTTTCCTCCATTTCTTTAATTTTGGACTAGATTGGCTATCAGATGGCAAATATGGTGCGCC
ACCCTTTGCGTTAGTGTTCCAGACATCCTTGCTCAATTTGATCAATGCTCCAGCGGGGCAACTCTACACTTGCTATTGTTGCCATGTTTCATCAATTAGAGTCTTTTACC
CTTCTTTTGAGATTTTAGACGTTTCTACCAATTTACTGTGCTTTCCGAGAATCTGTAGCCTGATTGTGATAGATGAACTTTGCAGAAGAAAAAATAATGGGGTTTTGAAA
TCTGGGGGAAGTATAATATGGCATAGCAGAGCTTGGAGTGAAGAAATTAAAACGAAGGTGGTGGGGGAGGCTTCTTATGCAGCGAAGCCAGGTGTTTTGAACTTTGGCCC
TTTGTTTTTGATAGTTTTAAAGCTGTGGATACTTCGCTTGGATCATGGAGCTGATAGGGGCGAATCTTTTTCAAAATTCCCAAGCTTGGAAATTGTTCCTTCCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTACTTGAATCCTTCTGCTGCTGGAATATGCACGTTTCACGTGCTTTTCCTCCATTTCTTTAATTTTGGACTAGATTGGCTATCAGATGGCAAATATGGTGCGCC
ACCCTTTGCGTTAGTGTTCCAGACATCCTTGCTCAATTTGATCAATGCTCCAGCGGGGCAACTCTACACTTGCTATTGTTGCCATGTTTCATCAATTAGAGTCTTTTACC
CTTCTTTTGAGATTTTAGACGTTTCTACCAATTTACTGTGCTTTCCGAGAATCTGTAGCCTGATTGTGATAGATGAACTTTGCAGAAGAAAAAATAATGGGGTTTTGAAA
TCTGGGGGAAGTATAATATGGCATAGCAGAGCTTGGAGTGAAGAAATTAAAACGAAGGTGGTGGGGGAGGCTTCTTATGCAGCGAAGCCAGGTGTTTTGAACTTTGGCCC
TTTGTTTTTGATAGTTTTAAAGCTGTGGATACTTCGCTTGGATCATGGAGCTGATAGGGGCGAATCTTTTTCAAAATTCCCAAGCTTGGAAATTGTTCCTTCCAATTAA
Protein sequenceShow/hide protein sequence
MVYLNPSAAGICTFHVLFLHFFNFGLDWLSDGKYGAPPFALVFQTSLLNLINAPAGQLYTCYCCHVSSIRVFYPSFEILDVSTNLLCFPRICSLIVIDELCRRKNNGVLK
SGGSIIWHSRAWSEEIKTKVVGEASYAAKPGVLNFGPLFLIVLKLWILRLDHGADRGESFSKFPSLEIVPSN