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Clc11G20480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSWI/SNF complex subunit SWI3B
Genome locationClcChr11:30712967..30713167
RNA-Seq ExpressionClc11G20480
SyntenyClc11G20480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064672.1 SWI/SNF complex subunit SWI3B [Cucumis melo var. makuwa]3.1e-0861.29Show/hide
Query:  EWDDLKEAKP-----SPVPY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGSPELPFSISF
        E +DL+EA+P     SP  +   GLLL S +P YRFSPRLS PT+ FVIPI  PELPFSISF
Subjt:  EWDDLKEAKP-----SPVPY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGSPELPFSISF
TrEMBL top hitse value%identityAlignment
A0A5D3D8W2 SWI/SNF complex subunit SWI3B1.5e-0861.29Show/hide
Query:  EWDDLKEAKP-----SPVPY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGSPELPFSISF
        E +DL+EA+P     SP  +   GLLL S +P YRFSPRLS PT+ FVIPI  PELPFSISF
Subjt:  EWDDLKEAKP-----SPVPY--IGLLLASAAPFYRFSPRLSLPTVNFVIPIGSPELPFSISF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTCTTCGAGTGGGACGACTTGAAGGAAGCAAAGCCCAGCCCAGTTCCATATATTGGGCTCCTTCTGGCGTCTGCTGCTCCGTTTTATCGCTTCTCGCCTCGCCT
GAGCTTACCGACGGTTAATTTTGTTATTCCGATCGGGTCCCCGGAGCTTCCTTTCTCTATTTCCTTTTCTCTGCTTCGGACAGCTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTCTTCGAGTGGGACGACTTGAAGGAAGCAAAGCCCAGCCCAGTTCCATATATTGGGCTCCTTCTGGCGTCTGCTGCTCCGTTTTATCGCTTCTCGCCTCGCCT
GAGCTTACCGACGGTTAATTTTGTTATTCCGATCGGGTCCCCGGAGCTTCCTTTCTCTATTTCCTTTTCTCTGCTTCGGACAGCTTGTTAG
Protein sequenceShow/hide protein sequence
MEVFEWDDLKEAKPSPVPYIGLLLASAAPFYRFSPRLSLPTVNFVIPIGSPELPFSISFSLLRTAC