; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G20530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G20530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionsplicing factor U2af small subunit B-like
Genome locationClcChr11:30731686..30732510
RNA-Seq ExpressionClc11G20530
SyntenyClc11G20530
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145565.1 splicing factor U2af small subunit B [Cucumis sativus]3.5e-14696.74Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYRDRDYRGNGRS+ER DRDGGRRR GSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ

XP_008453027.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo]4.1e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRHGSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ

XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]5.0e-14596.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+RDRD+RGNGRS+E   R DRDGGRRRHGSPRRSRSPV  REGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK

XP_023525325.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]9.5e-14495.68Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRERQ---DRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        SLSPRNRK+YDRRERDYRDRD+RGNGRS+ER    DRDGGRRRHGSPRRSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRERQ---DRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

XP_038900064.1 splicing factor U2af small subunit B-like [Benincasa hispida]1.4e-15098.91Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYRDRDYRGNGRS+ERQDRDGGRRRHGSPRRSRSPVT REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

TrEMBL top hitse value%identityAlignment
A0A0A0L4P8 Uncharacterized protein1.7e-14696.74Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYRDRDYRGNGRS+ER DRDGGRRR GSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ

A0A1S3BUN6 splicing factor U2af small subunit B-like2.0e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRHGSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ

A0A5A7VFL1 Splicing factor U2af small subunit B-like2.0e-14797.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ
        LSPRNRKEYDRRERDYR+R+YRGNGRS+ER DRDGGRRRHGSPR  RSRSPV AREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPR--RSRSPVTAREGSEERRARIEQWNREREEKQ

A0A6J1CN17 splicing factor U2af small subunit B-like2.4e-14596.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+RDRD+RGNGRS+E   R DRDGGRRRHGSPRRSRSPV  REGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEK

A0A6J1IV82 splicing factor U2af small subunit B-like4.6e-14495.68Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        SLSPRNRK+YDRRERDYRDRD+RGNGRS+E   R DRDGGRRRHGSPRRSRSPV  REGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRE---RQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

SwissProt top hitse value%identityAlignment
Q01081 Splicing factor U2AF 35 kDa subunit1.1e-6553.72Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR

Query:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHG
            R+R   DR           G GR R+R+ R   R R G
Subjt:  SLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHG

Q6AUG0 Splicing factor U2af small subunit B9.0e-11373.29Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNR-----KEYDRRERD--------------------YRDRD-YRGNG-----RSRERQDR--DGGRRRHGS-PRRSRSPVTAREGSEERRARIEQW
         SPR+R     ++  RRERD                    YR  D YRG G         R DR  DGGRRRHGS PRR+RSPV  RE SEERRA+IEQW
Subjt:  LSPRNR-----KEYDRRERD--------------------YRDRD-YRGNG-----RSRERQDR--DGGRRRHGS-PRRSRSPVTAREGSEERRARIEQW

Query:  NREREEK
        NREREEK
Subjt:  NREREEK

Q9FMY5 Splicing factor U2af small subunit B6.4e-12784.7Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D RDRD  GNG+      ER DRD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A9.2e-12681.85Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        RSRS+SPRN+++ DR     RE  +RDRD   YR G+G+      ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

Q9ZQW8 Splicing factor U2af small subunit A1.0e-10872.7Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSP---RNRKEYDR----RERDYRD------RDY------RGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
         SP     R++YDR    R RD+ D       DY      R + R R   D DG RRRH S  R+RSPV  R+GSEERRA+IEQWNRERE  Q
Subjt:  LSP---RNRKEYDR----RERDYRD------RDY------RGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.8e-2932.99Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D                    LFG  
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--

Query:  --RYRGYRRSRSRSRS---LSPRNRKEYDRRER-------------DYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEER
          ++  +  S S + S   LS  + ++  RR R              YR R Y G+ +   R+D+    RRH           +R+GS ER
Subjt:  --RYRGYRRSRSRSRS---LSPRNRKEYDRRER-------------DYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEER

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative6.6e-12781.85Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        RSRS+SPRN+++ DR     RE  +RDRD   YR G+G+      ERQ+RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDRDGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative3.3e-9478.1Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN+++ DR     RE  +RDRD   YR G+G+      ERQ+R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKEYDR-----RERDYRDRD---YR-GNGR----SRERQDR

Query:  DGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ
        DG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Subjt:  DGGR-RRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-12884.7Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D RDRD  GNG+      ER DRD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-12884.7Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE
        RS+SPR ++E+ R RER D RDRD  GNG+      ER DRD GGRRRHGSP+RSRSP   REGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEYDR-RER-DYRDRDYRGNGR----SRERQDRD-GGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCA
CAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGA
TTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGAC
TGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGAC
TATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGA
AGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCA
CAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGA
TTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGAC
TGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGAC
TATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGA
AGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRD
YRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ