; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC01G010010 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC01G010010
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRNase H domain-containing protein
Genome locationCmU531Chr01:13658115..13660243
RNA-Seq ExpressionCmUC01G010010
SyntenyCmUC01G010010
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4355486.1 hypothetical protein F8388_015240 [Cannabis sativa]5.0e-1027.75Show/hide
Query:  AFKKENDDLLSQVELVGNEYRGWVVVSV---------------MWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGC
        A+K+ + DL +    V +E+ GWV+ ++                   + +Q+W PP      +N D +   +  G GL  ++R   G ++VA+ LF LG 
Subjt:  AFKKENDDLLSQVELVGNEYRGWVVVSV---------------MWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGC

Query:  LNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPR
        ++V   E++ +  G+ LAHN     + V S+   V+  L+ST+  SS +  +  E L L   +    FS++PR
Subjt:  LNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPR

KAF4384062.1 hypothetical protein G4B88_030958 [Cannabis sativa]7.2e-0929.1Show/hide
Query:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI
        W PP    F +N D +  + Q+G  +  ++R   G ++VA+  F  GC +V   E S +L GL LA +   +   V S+   ++ N+   +   S +++I
Subjt:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI

Query:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS
            +     ++   F FVPR CN +A +LA  S
Subjt:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS

KAF4394884.1 hypothetical protein G4B88_002761 [Cannabis sativa]2.5e-0927.4Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q G GL  ++R D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD
         + ++      + S ++L  F F  R CN +A +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD

KAF4400621.1 hypothetical protein G4B88_023029 [Cannabis sativa]2.5e-0927.4Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q G GL  ++R D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD
         + ++      + S ++L  F F  R CN +A +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD

XP_030495109.1 uncharacterized protein LOC115710896 [Cannabis sativa]7.2e-0929.85Show/hide
Query:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI
        W PP    F +N DV+  + Q+G  +  ++R   G ++VA+  F  GC +V   E S +L GL LA +   +   V S+   ++ N+   +   S +++I
Subjt:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI

Query:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS
            +     ++   F FVPR CN +A +LA  S
Subjt:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS

TrEMBL top hitse value%identityAlignment
A0A7J6EAV9 RNase H domain-containing protein2.4e-1027.75Show/hide
Query:  AFKKENDDLLSQVELVGNEYRGWVVVSV---------------MWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGC
        A+K+ + DL +    V +E+ GWV+ ++                   + +Q+W PP      +N D +   +  G GL  ++R   G ++VA+ LF LG 
Subjt:  AFKKENDDLLSQVELVGNEYRGWVVVSV---------------MWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGC

Query:  LNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPR
        ++V   E++ +  G+ LAHN     + V S+   V+  L+ST+  SS +  +  E L L   +    FS++PR
Subjt:  LNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPR

A0A7J6HHY1 RNase H domain-containing protein1.2e-0927.4Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q G GL  ++R D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD
         + ++      + S ++L  F F  R CN +A +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD

A0A7J6I0M5 RNase H domain-containing protein1.2e-0927.4Show/hide
Query:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS
        S+   W PP +    +N D +    Q G GL  ++R D G ++VA+ +F  GCL+V+  E + +  GL LA        WV S+ ++++  + + +   +
Subjt:  SSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSS

Query:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD
         + ++      + S ++L  F F  R CN +A +LA +S   + S+
Subjt:  PYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSD

A0A803P8L6 Uncharacterized protein3.2e-1030.87Show/hide
Query:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI
        W PP  G F +N D +  + Q G GLG ++R   G VVVA+ +F  GCL+V   E   + +GL LA      ++ + S+ + V   L+  N   + +  +
Subjt:  WFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEI

Query:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSDLHEWLSQI
          + +    ++ L +F F PR CN +A  LA  +   K S++  W S +
Subjt:  YVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSDLHEWLSQI

A0A803PF28 Uncharacterized protein1.2e-0929.2Show/hide
Query:  VQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY
        V +W PP      +N D +  + QSG  L  ++R   G +VVA+A F  GC  V   E + +L GL LA         + S+   +++ +H  +   S +
Subjt:  VQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVVAQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPY

Query:  AEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS
         ++    + +  +++   F FVPR CN +A +LA  S
Subjt:  AEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACATAAAACTTAGATACTGGGCCTTTAA
GAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACAGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCC
CGCCGGTGAGGGGTGGCTTCAAGCTAAACGTTGACGTGGCTTGTCATTTGAATCAGTCGGGGATTGGGCTGGGCGATATGGTTAGACATGATGGTGGAAAGGTGGTTGTG
GCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGT
TGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAAT
TAAGGACCTTTAGTTTTGTTCCTAGAGGTTGTAATATAATGGCCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATT
GTAGGACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGGATGGTTGGAGGATCTAAAGATCTAGAATTTGAGCCTATGGAGAAATTGAATATCACGGGATGGTTAGATGGTTACATAAAACTTAGATACTGGGCCTTTAA
GAAAGAGAATGACGATCTGCTGAGCCAAGTAGAGCTAGTAGGGAATGAGTACAGAGGGTGGGTGGTCGTCTCGGTCATGTGGCGTCATAGTTCAGTGCAGAGGTGGTTCC
CGCCGGTGAGGGGTGGCTTCAAGCTAAACGTTGACGTGGCTTGTCATTTGAATCAGTCGGGGATTGGGCTGGGCGATATGGTTAGACATGATGGTGGAAAGGTGGTTGTG
GCCCAAGCTCTATTCCGTTTGGGTTGTTTGAATGTTGAGGCAGGGGAGATTTCGACTTTGTTGGCTGGTTTGCTGCTGGCTCATAACTTAGTGTGTGTGGATCTGTGGGT
TGAATCTAATATAGAGATTGTGGTGAAGAACCTCCATTCAACTAACTTTCCTTCTTCTCCTTATGCTGAAATCTATGTTGAAGCTTTAGCTTTGGGTTCTAGTTGGAAAT
TAAGGACCTTTAGTTTTGTTCCTAGAGGTTGTAATATAATGGCCTATAATCTAGCCCATCAATCATGCTGTGTCAAGTATTCTGACCTTCATGAGTGGCTTTCCCAAATT
GTAGGACTTTAA
Protein sequenceShow/hide protein sequence
MHRMVGGSKDLEFEPMEKLNITGWLDGYIKLRYWAFKKENDDLLSQVELVGNEYRGWVVVSVMWRHSSVQRWFPPVRGGFKLNVDVACHLNQSGIGLGDMVRHDGGKVVV
AQALFRLGCLNVEAGEISTLLAGLLLAHNLVCVDLWVESNIEIVVKNLHSTNFPSSPYAEIYVEALALGSSWKLRTFSFVPRGCNIMAYNLAHQSCCVKYSDLHEWLSQI
VGL