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CmUC01G010940 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC01G010940
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRNase H domain-containing protein
Genome locationCmU531Chr01:16670733..16671071
RNA-Seq ExpressionCmUC01G010940
SyntenyCmUC01G010940
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8811717.1 hypothetical protein D1007_11513 [Hordeum vulgare]4.3e-1039.08Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W+  P  + KLNVDA +  ++ +  I AI+R+ KG  L  A   ID+ + P  AEA A++ GL+ A ++GC  ++V SD LEI+  +
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]3.9e-1141.38Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W P P  F KLNVD A  +++ ++GI  +LR+  G ++  A K  D    P   E  A+  GL F  SLG PNL+VESDCL ++ ++
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

XP_024033146.1 uncharacterized protein LOC112095446 [Citrus clementina]1.3e-0937.63Show/hide
Query:  KDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILN
        +D++    W P P+ F K+NVDAA  +E   TG+  ++RN +G ++  AVKS         AEA A+K GL  A       +I+E+DC+E+ N
Subjt:  KDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILN

XP_024046567.1 uncharacterized protein LOC112100924 [Citrus clementina]5.6e-1040.96Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEI
        WTP P N  K+NVDAA K +    G+  ++RN +G +L  AVKS++      +AEA+AIK G+  A  L   ++I+E+DC  +
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEI

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.2e-1446.07Show/hide
Query:  KKDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDC
        KK  T    W+  P +F KLNVDAAWK     +G SAI+R+++G+L  V + SID  +PPPLAEAF + +GL   + +    +IV+SDC
Subjt:  KKDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDC

TrEMBL top hitse value%identityAlignment
A0A2I4DVZ3 uncharacterized protein LOC1089839715.1e-0935.96Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDG
        W P   +F KLNVD A  ++  + G+  +LR+  G ++  A K+ D    P   E  A+  GL     LG PNL+VE+DCL ++ ++ G
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDG

A0A2I4FLN6 uncharacterized protein LOC1090001951.9e-1141.38Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W P P  F KLNVD A  +++ ++GI  +LR+  G ++  A K  D    P   E  A+  GL F  SLG PNL+VESDCL ++ ++
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

A0A2I4FVF0 uncharacterized protein LOC1090023665.1e-0936.84Show/hide
Query:  KDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        K +    +W+P+P  F KLNVD A   +  + GI  ILR+ KG+++    K       P   EA A+  GL F A  G P L++E+DCL ++N +
Subjt:  KDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

A0A453QKC2 RNase H domain-containing protein3.0e-0934.69Show/hide
Query:  HNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQG
        + WT     F KLNVDA++++   Q  +  +LR+ KG  +  + + ++       AEA+A++ GL  A  LG   L+VESDCLE++N +   G    G
Subjt:  HNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQG

A0A5N5F3P3 RNase H domain-containing protein7.9e-1036.78Show/hide
Query:  AHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL
        A  WT  PL F K+NVD AW   +    +  ++R+  GN +  + K+ +    P L EAFA++EGL  A   G  N+I++SD  +I+
Subjt:  AHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAAGGATTTAACATTTGCTCATAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACG
GGTATTAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGTAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATA
AAGGAAGGTCTGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGG
CAAGGGCTGCAGCTGCTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGAAGGATTTAACATTTGCTCATAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACG
GGTATTAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGTAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATA
AAGGAAGGTCTGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGG
CAAGGGCTGCAGCTGCTGGATTGA
Protein sequenceShow/hide protein sequence
MPKKDLTFAHNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAVKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMR
QGLQLLD