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CmUC01G012500 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC01G012500
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPhotosystem II protein D1
Genome locationCmU531Chr01:24831815..24834713
RNA-Seq ExpressionCmUC01G012500
SyntenyCmUC01G012500
Gene Ontology termsGO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD65979.1 unnamed protein product [Brassica oleracea]6.8e-0470.27Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS
        FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS
TrEMBL top hitse value%identityAlignment
A0A287U321 Uncharacterized protein4.3e-0469.05Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL
        FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL
A0A287U3B3 Uncharacterized protein4.3e-0469.05Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL
        FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL
A0A3P6HJ61 Photosystem II protein D13.3e-0470.27Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS
        FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS
SwissProt top hitse value%identityAlignment
A5A8K9 Photosystem II protein D1 21.3e-0570.59Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ S +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
B1XIP3 Photosystem II protein D1 32.2e-0567.65Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
P07826 Photosystem II protein D1 12.2e-0567.65Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
P48265 Photosystem II protein D12.2e-0567.65Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
Q8DIV4 Photosystem II protein D1 32.2e-0567.65Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A2.0e-0667.65Show/hide
Query:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY
        FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Subjt:  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGC
TTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGC
TTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGC
TTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGC
TTTAG
Protein sequenceShow/hide protein sequence
MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL