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CmUC01G022010 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC01G022010
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionLysM domain-containing protein
Genome locationCmU531Chr01:34101887..34104357
RNA-Seq ExpressionCmUC01G022010
SyntenyCmUC01G022010
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9449161.1 hypothetical protein H6P81_009126 [Aristolochia fimbriata]8.7e-1451.22Show/hide
Query:  LLVFSLLIFSISVETRTSFR---GVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCL
        +LV SL++F+IS      F    G+ +A++ LE  CN  +GV+ GDTCFD+A+ F L+T+ FN +NPNLNC+SLF+GQWLC+
Subjt:  LLVFSLLIFSISVETRTSFR---GVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCL

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]4.0e-2767.37Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT
        M     SIA+FLL  SLLIF+ISV+ R  FR V   EA LELQCNK YGVK+GDTCF +AQ FKL+T HF+FINPNLNCS+LF+ QWLC+NA LT
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]7.8e-3177.42Show/hide
Query:  TSIAMFLLVFSLLIFSISVETR-TSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLTIP
        +S  +FLL FSLLIFSISVETR T FRGV   EAGLELQCNKVYGVKNGDTCFDL QKFK++T HF+FINPNLNC+ LFIGQWLCL+A+L +P
Subjt:  TSIAMFLLVFSLLIFSISVETR-TSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLTIP

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]2.9e-2567.37Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT
        M      IA+FLL F LLIFSISV+       V  AE  LELQCNK YGVK+GDTCF LA  FKLST HFNFINPNLNCS+LF+GQWLC+NA LT
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]7.1e-2464.21Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT
        M     SIA+FLL  SLLIF+ISV+       V   EA LELQCNK YGVK+GDTCF +AQ FKL+T HF+FINPNLNCS+LF+ QWLC+NA LT
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.8e-3177.42Show/hide
Query:  TSIAMFLLVFSLLIFSISVETR-TSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLTIP
        +S  +FLL FSLLIFSISVETR T FRGV   EAGLELQCNKVYGVKNGDTCFDL QKFK++T HF+FINPNLNC+ LFIGQWLCL+A+L +P
Subjt:  TSIAMFLLVFSLLIFSISVETR-TSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLTIP

A0A0A0KLD2 LysM domain-containing protein1.9e-2767.37Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT
        M     SIA+FLL  SLLIF+ISV+ R  FR V   EA LELQCNK YGVK+GDTCF +AQ FKL+T HF+FINPNLNCS+LF+ QWLC+NA LT
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.4e-2567.37Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT
        M      IA+FLL F LLIFSISV+       V  AE  LELQCNK YGVK+GDTCF LA  FKLST HFNFINPNLNCS+LF+GQWLC+NA LT
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALLT

A0A1U8FLA1 uncharacterized protein LOC1078594815.5e-1440Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEA----------EAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCL
        M  P   +  FL++FSLL++   VE++ +    + +          +   E+ C KV  VKNGDTCFD+++KF L +  F+ INPNLNC++LF+GQWLC+
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEA----------EAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCL

Query:  NALLT
        +  L+
Subjt:  NALLT

M1C1H7 LysM domain-containing protein2.5e-1442.55Show/hide
Query:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALL
        M  P   +  F+L+ SLL+F   VE++ +    +  ++  E++C+KV  VK+GDTCFD++  F L +  FN INPNL C++LF+GQWLC++  L
Subjt:  MGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNALL

SwissProt top hitse value%identityAlignment
D4AVW3 LysM domain-containing protein ARB_003272.9e-0435.59Show/hide
Query:  AEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINP--NLNCSSLFIGQWLCL
        ++A +G    C + YGVK GD C  +  KF ++  +F F+NP  N NC++L+  +  C+
Subjt:  AEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINP--NLNCSSLFIGQWLCL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTGCCAACACCCATAACCAAATTCAGAGCTTTCTACTTTACCAAAATTATGGGCAACCCTATTACTTCTATTGCCATGTTCTTATTGGTTTTCTCTCTTCTTAT
TTTCTCAATTTCTGTGGAAACTCGTACTTCCTTCCGTGGGGTTGCTGAGGCAGAGGCAGGCTTGGAATTGCAATGCAACAAAGTTTATGGAGTTAAAAATGGAGACACTT
GTTTTGATCTTGCTCAAAAATTCAAGCTCTCCACTCAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTTCTCTCTTTATTGGCCAATGGCTCTGTCTCAATGCC
CTTCTTACCATTCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
AAAGGCCGGCCTTTGTATGTTTGGAGCTTCGATGGCCACGCTGCCTTATTTTGAATTTTCTGTTCTCTACCAAAAATTTTGGAGCTATAAATTGGAGGAGTTTCATGAAT
GCCATTGCCAACACCCATAACCAAATTCAGAGCTTTCTACTTTACCAAAATTATGGGCAACCCTATTACTTCTATTGCCATGTTCTTATTGGTTTTCTCTCTTCTTATTT
TCTCAATTTCTGTGGAAACTCGTACTTCCTTCCGTGGGGTTGCTGAGGCAGAGGCAGGCTTGGAATTGCAATGCAACAAAGTTTATGGAGTTAAAAATGGAGACACTTGT
TTTGATCTTGCTCAAAAATTCAAGCTCTCCACTCAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTTCTCTCTTTATTGGCCAATGGCTCTGTCTCAATGCCCT
TCTTACCATTCCTAATTAGCTCTTACTATCACCTTTCTTTCAAATAAGGCTTAAAAATGTTACTTCCTCTACAATGCTTTGCTTCTTCTTAATTATTGTGTTTTCAGCTT
TCATTCTGTGTTTGTTTGTCTTTCACTTAATTGGTTTTATGTAATCTCAATCCCATTCTTAACTTTATTGGTTAAGAAAATTCTAAACC
Protein sequenceShow/hide protein sequence
MPLPTPITKFRAFYFTKIMGNPITSIAMFLLVFSLLIFSISVETRTSFRGVAEAEAGLELQCNKVYGVKNGDTCFDLAQKFKLSTQHFNFINPNLNCSSLFIGQWLCLNA
LLTIPN