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CmUC02G035450 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC02G035450
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCmU531Chr02:14095694..14096650
RNA-Seq ExpressionCmUC02G035450
SyntenyCmUC02G035450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033896.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-0848.75Show/hide
Query:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        EL +FI   E   + E+E E V + EE E   +EV+   E+SLR++LGF+  GTMKL+  +K ++V+ILID  ATHNFIH
Subjt:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

KAA0036566.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-0748.65Show/hide
Query:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        FI   E+ E E E    + EE E   +E++   E+SLR++LGF+  GTMKL+  +K++EV+ILID  ATHNFIH
Subjt:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

TYK01280.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-0848.75Show/hide
Query:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        EL +FI   E   + E+E E V + EE E   +EV+   E+SLR++LGF+  GTMKL+  +K ++V+ILID  ATHNFIH
Subjt:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

TYK22652.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-0848.65Show/hide
Query:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        FI   E+ E E E    + EE E   +E++   E+SLR++LGF+  GTMKL+  +K++EV+ILID  ATHNFIH
Subjt:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

XP_038906781.1 uncharacterized protein LOC120092698 [Benincasa hispida]9.2e-0848.15Show/hide
Query:  ELNIFIARGEKGEEEVELVADMEEA----EITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        EL +FI       +E E V D EE     E+  +E E+  E+ LRS+ G S  GTMKLK E+K KEV++LIDC  THNF+H
Subjt:  ELNIFIARGEKGEEEVELVADMEEA----EITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

TrEMBL top hitse value%identityAlignment
A0A5A7SVA3 Retrotransposon protein2.0e-0848.75Show/hide
Query:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        EL +FI   E   + E+E E V + EE E   +EV+   E+SLR++LGF+  GTMKL+  +K ++V+ILID  ATHNFIH
Subjt:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

A0A5A7T3B8 Retrotransposon protein7.6e-0848.65Show/hide
Query:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        FI   E+ E E E    + EE E   +E++   E+SLR++LGF+  GTMKL+  +K++EV+ILID  ATHNFIH
Subjt:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

A0A5D3BQE6 Retrotransposon protein2.0e-0848.75Show/hide
Query:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        EL +FI   E   + E+E E V + EE E   +EV+   E+SLR++LGF+  GTMKL+  +K ++V+ILID  ATHNFIH
Subjt:  ELNIFIARGE---KGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

A0A5D3DGC7 Retrotransposon protein4.5e-0848.65Show/hide
Query:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH
        FI   E+ E E E    + EE E   +E++   E+SLR++LGF+  GTMKL+  +K++EV+ILID  ATHNFIH
Subjt:  FIARGEKGEEEVEL-VADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH

A0A6J1DN22 Reverse transcriptase7.6e-0848.72Show/hide
Query:  ELNIFIARGEKGEE--EVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFI
        EL +F+   ++G E  + EL+   E  E T+  VEE  E++L +++GFS  GTMKL+  +++KEVVILIDC ATHNFI
Subjt:  ELNIFIARGEKGEE--EVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCTTCACCGAGGAGAATCTGAAATCGGAACTCAACATTTTCATCGCCAGAGGAGAGAAGGGCGAAGAGGAAGTTGAATTGGTAGCCGACATGGAAGAAGCTGA
AATAACGGTAGTTGAAGTGGAAGAAAACGTAGAGGTATCGTTAAGGTCTCTGTTGGGATTTTCGAGAATTGGGACCATGAAACTCAAAGAGGAGGTGAAGAACAAAGAGG
TGGTGATCCTGATTGACTGTAGAGCTACCCATAACTTCATTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCTTCACCGAGGAGAATCTGAAATCGGAACTCAACATTTTCATCGCCAGAGGAGAGAAGGGCGAAGAGGAAGTTGAATTGGTAGCCGACATGGAAGAAGCTGA
AATAACGGTAGTTGAAGTGGAAGAAAACGTAGAGGTATCGTTAAGGTCTCTGTTGGGATTTTCGAGAATTGGGACCATGAAACTCAAAGAGGAGGTGAAGAACAAAGAGG
TGGTGATCCTGATTGACTGTAGAGCTACCCATAACTTCATTCATTAG
Protein sequenceShow/hide protein sequence
MSIFTEENLKSELNIFIARGEKGEEEVELVADMEEAEITVVEVEENVEVSLRSLLGFSRIGTMKLKEEVKNKEVVILIDCRATHNFIH