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CmUC02G036000 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC02G036000
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmU531Chr02:17763342..17763658
RNA-Seq ExpressionCmUC02G036000
SyntenyCmUC02G036000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050828.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.8e-1174Show/hide
Query:  RSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD
        R  SKG+A+KCFLCHKGHFKK+ PLNKSKEAS SKHV E+S  NV DGY+
Subjt:  RSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD

KAA0054900.1 putative Ty-1 copia retrotransposon [Cucumis melo var. makuwa]1.1e-1280.39Show/hide
Query:  SRSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD
        SR  SKGKA+KCFLCHKGHFKKHCPLNKS EAS SKHVG  S  NV DGYD
Subjt:  SRSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD

KAA0057494.1 hypothetical protein E6C27_scaffold280G003800 [Cucumis melo var. makuwa]2.6e-1167.27Show/hide
Query:  SKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM
        +KSKG+ +KCFL HKGHFKKHC LNKSK+AS SKH  E++A NV +GYD   VLM
Subjt:  SKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM

KAA0065973.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-1170.69Show/hide
Query:  SRSKSKGKAKKCFLCH-KGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM
        SR  SKG+ +KCFLCH KGHFKKHC LNKSKEAS SKHV E+S  NV DGYD   +LM
Subjt:  SRSKSKGKAKKCFLCH-KGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM

KAE8649708.1 hypothetical protein Csa_011950 [Cucumis sativus]2.0e-1171.19Show/hide
Query:  SRSKSKGKAKKCFLCHK-GHFKKHCPLNKSKEASGSKH-VGESSAPNVNDGYDFAGVLM
        SRSKSKGK +KCFLCHK GHFKK+CPLNK KEAS S++  GE+S+ NV DGYD   VLM
Subjt:  SRSKSKGKAKKCFLCHK-GHFKKHCPLNKSKEASGSKH-VGESSAPNVNDGYDFAGVLM

TrEMBL top hitse value%identityAlignment
A0A5A7U6F0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-1174Show/hide
Query:  RSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD
        R  SKG+A+KCFLCHKGHFKK+ PLNKSKEAS SKHV E+S  NV DGY+
Subjt:  RSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD

A0A5A7UHX7 Putative Ty-1 copia retrotransposon5.1e-1380.39Show/hide
Query:  SRSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD
        SR  SKGKA+KCFLCHKGHFKKHCPLNKS EAS SKHVG  S  NV DGYD
Subjt:  SRSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYD

A0A5A7VCT5 Retrovirus-related Pol polyprotein from transposon TNT 1-945.7e-1270.69Show/hide
Query:  SRSKSKGKAKKCFLCH-KGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM
        SR  SKG+ +KCFLCH KGHFKKHC LNKSKEAS SKHV E+S  NV DGYD   +LM
Subjt:  SRSKSKGKAKKCFLCH-KGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM

A0A5D3DU26 Copia retroelement pol polyprotein-like1.4e-1068.52Show/hide
Query:  SRSKSKGKAKKCFLCHK-GHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFA
        SR  SKG+A+KCFLC+K GHFKKHCPLN S EAS SKH  ++S  NV DGYD A
Subjt:  SRSKSKGKAKKCFLCHK-GHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFA

A0A5D3E2S6 Uncharacterized protein1.3e-1167.27Show/hide
Query:  SKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM
        +KSKG+ +KCFL HKGHFKKHC LNKSK+AS SKH  E++A NV +GYD   VLM
Subjt:  SKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCCAGGTCGAAATCCAAAGGGAAAGCTAAAAAATGTTTCTTGTGTCATAAAGGACATTTTAAGAAACATTGCCCTTTGAATAAGAGTAAGGAAGCATCAGGCAG
CAAGCATGTAGGTGAATCAAGTGCACCGAATGTGAATGATGGGTATGATTTTGCAGGGGTTTTGATGAAAATGATGGGGGAAAAGTTTTGCTTGGTGATAGCGATACCTG
TGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTCCAGGTCGAAATCCAAAGGGAAAGCTAAAAAATGTTTCTTGTGTCATAAAGGACATTTTAAGAAACATTGCCCTTTGAATAAGAGTAAGGAAGCATCAGGCAG
CAAGCATGTAGGTGAATCAAGTGCACCGAATGTGAATGATGGGTATGATTTTGCAGGGGTTTTGATGAAAATGATGGGGGAAAAGTTTTGCTTGGTGATAGCGATACCTG
TGATGTAA
Protein sequenceShow/hide protein sequence
MRSRSKSKGKAKKCFLCHKGHFKKHCPLNKSKEASGSKHVGESSAPNVNDGYDFAGVLMKMMGEKFCLVIAIPVM