CuGenDBv2

Gene ID	CmUC02G036160
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Gag/pol protein
Genome location	CmU531Chr02:19648903..19652285
RNA-Seq Expression	CmUC02G036160
Synteny	CmUC02G036160
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-44

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-44

74.63

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Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-44

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-44

74.63

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Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-44

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

8.0e-45

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

A0A5A7TU93 Gag/pol protein

8.0e-45

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

A0A5A7TWB9 Gag/pol protein

8.0e-45

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

A0A5A7V4M1 Gag/pol protein

8.0e-45

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

A0A5D3CPJ6 Gag/pol protein

8.0e-45

74.63

Show/hide

Query:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV
        L SLSEVLAKKHE+M+TAREIMDSLQE+FGQ S QIK D LK+IYNARMNE +SV+EHVLNMMVHFNVAE+NG +I+EASQ+SFI+E L ESFLQFR+N 
Subjt:  LPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERL-ESFLQFRTNV

Query:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV
        VMNK+ Y+LTTLLNELQ +ES+ K +GQ G+ NV
Subjt:  VMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAAAAACTCATAACTCTGCAACTAGGCATGGAGAGGAGGAGGAGGAAGAAGAAGAATCAGGTCTAATATTTGGAAAACCACGAGCTGTAGAGATCGAGTTAAGCGC
TGAAACTTTAAGGTACTCAATGCTGAAGAATATTGACAAGGCATTTGAGTATCCTAAGGACCCAGCACTGAAGGACTCGGAGAAGCGAAAGAGTTCCCAGTGCTTAACCT
ACCCAAGCCTCATCCTGCTGAAGTTTCAAGCTGTCAACAAATACCTTTCCTTCATAGTTGTTGTACGTGTAAATAATCTTAAGTTAGTCAAGTACGGATGGACAGTGAAC
CTCACAAAAGGGGTGAAGTTTGCTGCCTTCACATCTCTTCCCAGCTTATCTGAAGTTTTGGCAAAGAAGCATGAAACCATGGTCACTGCTCGTGAAATCATGGATTCATT
GCAAGAGATATTTGGACAACCATCCTCACAAATCAAACAAGATACTCTGAAATTCATTTATAATGCACGTATGAACGAGGAGTCATCAGTGCAAGAACATGTTCTCAACA
TGATGGTCCACTTCAATGTGGCTGAAATTAATGGGGTCATTATCAATGAGGCTAGTCAAATTAGTTTTATTATGGAGAGACTTGAGAGTTTCCTTCAGTTCAGGACAAAT
GTTGTTATGAACAAACTGACCTACTCTCTTACTACCCTCCTTAACGAGCTACAAATATATGAGTCCATGCATAAAGGCGAAGGACAAGATGGGAAGACAAATGTTCCTCT
AAGAAGTTCTACAGAAGTTTGA

mRNA sequence

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Protein sequence

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MKKTHNSATRHGEEEEEEEESGLIFGKPRAVEIELSAETLRYSMLKNIDKAFEYPKDPALKDSEKRKSSQCLTYPSLILLKFQAVNKYLSFIVVVRVNNLKLVKYGWTVN
LTKGVKFAAFTSLPSLSEVLAKKHETMVTAREIMDSLQEIFGQPSSQIKQDTLKFIYNARMNEESSVQEHVLNMMVHFNVAEINGVIINEASQISFIMERLESFLQFRTN
VVMNKLTYSLTTLLNELQIYESMHKGEGQDGKTNVPLRSSTEV

CmUC02G036160 (gene) of Watermelon (USVL531) v1 genome