; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC02G043830 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC02G043830
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6
Genome locationCmU531Chr02:31819982..31822097
RNA-Seq ExpressionCmUC02G043830
SyntenyCmUC02G043830
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604735.1 DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]2.1e-12391.25Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VVTKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK YAK GVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]3.5e-12692.08Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDIKRETKY+DS+VTKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYS+GKLD+EYINTLKGFC RMIQK+KVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTGSGEFDFIP+GKICYKCYAKGGVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022946967.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata]2.1e-12391.25Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VVTKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK YAK GVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_022970903.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]1.6e-12391.25Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VVTKSLK+LQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK YAK GVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

XP_038900531.1 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]4.3e-11689.54Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSK QGPSSLKRKR DSAHG GGALIEHEKVLHDLICSKQ+MGIWIGDI++ETKY+D VV K LKSLQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLDQEYINTLKGFCARMIQKLKV+TIEG V SFKKSG SKVDLSREQIEEIVNALVLDNEVMEVK TGS EFDFIPV KICYKCYAK  VKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTK-WL
        PKTGAMASIPCGVCPRISHCT DGIIS RTC+YYTK W+
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTK-WL

TrEMBL top hitse value%identityAlignment
A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like8.2e-10578.6Show/hide
Query:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKEL
        MSKSQGPSSLKRKRPD  + + SGGALI  EKVL+DLICSKQSMGI   D+KRETK+++SVVTKSLKSLQ +GL+K+V+HYQNKGKKFYLS DFEP+KEL
Subjt:  MSKSQGPSSLKRKRPD--SAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKEL

Query:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-CYAKGGV
        TGGNWY DG+LD++YINTLK  CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GEF+FIP+GKICYK C   GG+
Subjt:  TGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYK-CYAKGGV

Query:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KGEPK GAMASIPCGVCPRI++CTP+GIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1D758 DNA-directed RNA polymerase III subunit rpc6 isoform X28.7e-10792.96Show/hide
Query:  MGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFK
        MGIWIGDIKRETKY+DS+VTKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTGGNWYS+GKLD+EYINTLKGFC RMIQK+KVATIEGIVDSFK
Subjt:  MGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFK

Query:  KSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        KSGASKVDLSREQI+EIVNALVLDNEVMEVKSTGSGEFDFIP+GKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Subjt:  KSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X11.7e-12692.08Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRPDS+  SGGALIEHEKVL+DLICSKQSMGIWIGDIKRETKY+DS+VTKSLK+LQA+G++KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYS+GKLD+EYINTLKGFC RMIQK+KVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTGSGEFDFIP+GKICYKCYAKGGVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMASIPCGVCPRISHCTP+G+ISPRTCVYYTKWLDF
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1G553 DNA-directed RNA polymerase III subunit rpc61.0e-12391.25Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VVTKSLK+LQ RGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK YAK GVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

A0A6J1I599 DNA-directed RNA polymerase III subunit rpc67.9e-12491.25Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+SQGPSSLKRKRP+ AHG GGALIEHEKVL+DLICSKQSMGIWIGD+KRETKY D+VVTKSLK+LQARGL+KLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTG+GEFDFIPVGKICYK YAK GVKGE
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTP+GIISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
Q2T9S3 DNA-directed RNA polymerase III subunit RPC68.9e-2430.43Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+  +       P TG +   P
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP

Query:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF
        CG+CP    C   G ISP  C+Y T+WL+F
Subjt:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc61.4e-2428.63Show/hide
Query:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG
        +  S   +S K   P+      G  +E + +++ LI +  + G W  ++K  + Y    +TK LK+L++R L+K V+  Q+  KK Y+  + EPS+E+TG
Subjt:  MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVK
        G  YSD   D +YI  +K      +       +  I+   +K    A+   L  E I+ +VN ++ D ++ E++ T  G       G I YK       K
Subjt:  GNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVK

Query:  GEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLD
                 ++PCG CP    C+ +G++SP+ CVY+ ++L+
Subjt:  GEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC62.0e-2330.87Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+  A   +   P TG + + P
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP

Query:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF
        CG+CP    C   G ISP  C+Y T+WL+F
Subjt:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC62.0e-2330.43Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL
        EK+++ +I    + GIW  DI+ ++    + + K LK+L+++ L+K V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKL

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+          P TG +   P
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIP

Query:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF
        CG+CP    C   G ISP  C+Y T+WL+F
Subjt:  CGVCPRISHCTPDGIISPRTCVYYTKWLDF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC62.4e-2127.63Show/hide
Query:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ--
        EKV++ ++    + GIWI DI+ ++  +   + K LK+L+ + L+K V+      KK Y+  + EP   +TGG WY D   + E+++ L   C R +Q  
Subjt:  EKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQ--

Query:  ---------------KLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPC
                       ++   T+  +       G SKV+L+   +E I+  +V D     V+    G F +  V                P TG +  +PC
Subjt:  ---------------KLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPC

Query:  GVCPRISHCTPDGIISPRTCVYYTKWLD
        G+CP I +C+  G ++  TC Y   WLD
Subjt:  GVCPRISHCTPDGIISPRTCVYYTKWLD

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases3.2e-5346.12Show/hide
Query:  KRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
        KRKRPD     G     HEK L DLI   Q  G  + ++KRE     ++VT+ + SL+ + L+K V +  NKG K YL+ +FEP  ELTGG WY+DG LD
Subjt:  KRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD

Query:  QEYINTLKGFCARMIQ--KLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMAS
           I  LK  C  +++  + +V T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    +G++CY+   K    GEP+ GA AS
Subjt:  QEYINTLKGFCARMIQ--KLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMAS

Query:  IPCGVCPRISHCTPDGIISPRTCVYYTKWLDF
        IPCGVCP I+ C+PDG+ISP TCVY+ KWLDF
Subjt:  IPCGVCPRISHCTPDGIISPRTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTG
CAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTA
AACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGAC
CAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAA
AGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTG
TTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGT
ACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTATATTACACCAAGTGGTTAGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTTGTTTTTTGGTCAATTTGGTTCATTTTCCTGCCAACAGACATCACTCATTCGGCCTTCTACGTTTCAGACTTCGGAGAAACCGAAACCCCGCTCCCTCTCCATTTTC
TGATCAAAACCACTCTCGCCGGACCGCTCTCTGTCTCTCCGCCGTCCCTCGCGGTCTTTTTCCTCTAGGTTGTCAGAACCCTAGCCTTTTAGGGCGCTCAACGTTGCTCT
TTCGTTGCCGTTGCTTCTTTCACTCTGCAATTATCGTCTCTAAGACCTTCTGGTGCTAATATTTGATTTGAAGTCGCGGACCTTCAGATGAGCAAATCACAAGGGCCTTC
ATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTT
GGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAAC
AAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAA
AGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAA
TTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGC
TATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCC
TAGGACTTGTGTATATTACACCAAGTGGTTAGATTTTTAAGTTTAAAGGTTTTTTTTTTTTTTTTTTTCTTAACTGGTTTTAAGAGAATGGATTGGTGAGAATTCCAACA
TCTGAAGTGTAAGGGAAGATATTAAATGTGTAACCACACAAACTATGCTCGAGTTGACAATTG
Protein sequenceShow/hide protein sequence
MSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
QEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHC
TPDGIISPRTCVYYTKWLDF