CuGenDBv2

Gene ID	CmUC02G047100
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	CmU531Chr02:34744493..34746946
RNA-Seq Expression	CmUC02G047100
Synteny	CmUC02G047100
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR013955 - Replication factor A, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

7.6e-75

91.56

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCY+VCSICER++ DNPSSSLCKFCNFNAFNPG SSSKR+FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAE  SEILEGEMFR+TISKPKNGNAQHSRVVQVVPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

2.0e-75

92.86

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

2.0e-75

92.86

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

1.3e-74

92.86

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNP SSSSKRVFRLLMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

6.2e-77

94.81

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+ DNPSSS+CKFCNFNAFNP  SSSKRVFRLLMSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAE VSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CHW5 uncharacterized protein LOC111011075

3.7e-75

91.56

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCY+VCSICER++ DNPSSSLCKFCNFNAFNPG SSSKR+FRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAE  SEILEGEMFR+TISKPKNGNAQHSRVVQVVPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

9.7e-76

92.86

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

9.7e-76

92.86

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

1.1e-74

92.21

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPFAAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

A0A6J1JE09 uncharacterized protein LOC111483608 isoform X1

1.0e-72

88.75

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCY+VCSICERT+  NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        HPF      AAEAVSEILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSSGFQPAI RLREL
Subjt:  HPF------AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.5e-41

56.29

Show/hide

Query:  TTMCAVIAMDHTSFCYKVCSICERTV-SDN---PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T +CY+VCS C+R + SDN    SSS CKFC        S   K ++R+LMSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P 
Subjt:  TTMCAVIAMDHTSFCYKVCSICERTV-SDN---PSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF

Query:  AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL
        AA  V+++ +GEM R+T+++P+N NAQH RV  VVPL SG QPAI  LR++
Subjt:  AAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLREL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATTTCCGTCTTTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATGA
TAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCTC
TTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAATA
TGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAAGG
AGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGAC
TGAGGGAATTGGGTGTATTCATAGCGAAGGGCATGCATAGACAACAAGAGCTAGTATTACATTGTCTTCACCCAGTGAGCGTATCTTATGATTGCCCAGTGGCTCTATAT
ATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGGA
AATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

mRNA sequence

Show/hide mRNA sequence

AATTTCCGTCTTTTTCCCTCCAAACAGTGTTGTGTATAGTGGCGGAGCGCCGCTGTGTTTTCAGTTTTCAGGAACGGAGGCATTCTCCTTCAGAGGAGTAATGGAAAATG
ATAAGCCAATAACAACCATGTGCGCAGTGATAGCTATGGATCACACCAGTTTCTGTTACAAAGTTTGTTCTATCTGTGAGAGAACAGTTTCTGATAACCCATCTTCTTCT
CTTTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCTTCCTCCAAACGTGTCTTTCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAGACTGTAAT
ATGCTTTGATAGGGCTGCTAGGGTTCTTTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAAG
GAGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACATTCAAGAGTTGTCCAAGTTGTTCCTCTAAGTTCAGGTTTTCAACCAGCAATTTTTAGA
CTGAGGGAATTGGGTGTATTCATAGCGAAGGGCATGCATAGACAACAAGAGCTAGTATTACATTGTCTTCACCCAGTGAGCGTATCTTATGATTGCCCAGTGGCTCTATA
TATTTTCATTATTGAAATCTACTTGCAAATGGCTGCTAAATCTTGTTTACAGAGTCAATTCCAATTGATAACTCTGATTTCATTTGCTGTTGGTAAGGGACAAAATATGG
AAATGGTTCCTAAAAGTAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAAGCCTATCCCATTCCCGACATTGTTTGCATTTTTGCTATCATTTAGAATGTGA

Protein sequence

Show/hide protein sequence

ISVFFPPNSVVYSGGAPLCFQFSGTEAFSFRGVMENDKPITTMCAVIAMDHTSFCYKVCSICERTVSDNPSSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVI
CFDRAARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRITISKPKNGNAQHSRVVQVVPLSSGFQPAIFRLRELGVFIAKGMHRQQELVLHCLHPVSVSYDCPVALY
IFIIEIYLQMAAKSCLQSQFQLITLISFAVGKGQNMEMVPKSKRDVMWAPQKLPKPIPFPTLFAFLLSFRM

CmUC02G047100 (gene) of Watermelon (USVL531) v1 genome