CuGenDBv2

Gene ID	CmUC02G048690
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Genome location	CmU531Chr02:36256045..36258003
RNA-Seq Expression	CmUC02G048690
Synteny	CmUC02G048690
Gene Ontology terms	GO:0006457 - protein folding (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7010270.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-84

80.98

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  SLRS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+  A+GGHR  RNQRRN RLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_004142113.1 chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus]

2.2e-84

83.41

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APVVDS P P L FDSSPVT  SLRSGGDLVLQRKSKAKS+L VSKSVDLRSSFVN G EW+  A GG +S RNQRRNRRLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_022944576.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]

2.6e-85

81.46

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  SLRS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+  A+GGHR  RNQRRNRRLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_023512052.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]

2.0e-85

80.38

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Query:  FSPRAPVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFD
        F   APV+DSPPCP LC DSSPVT  SLRS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+  A+GGHR  RNQRRNRRLVVVNEFAGQYE+SFD
Subjt:  FSPRAPVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFD

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM
        DVKMQI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLM
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM

Query:  ETVIWPSDD
        ETVIWPSDD
Subjt:  ETVIWPSDD

XP_038902700.1 chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]

9.7e-88

85.37

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APVVDSPPCPSLC DSSPVT TSLRSGGDLVLQRKS   SHLAVSKSVDLRSSFVNS GEWR  A+GG+RS RNQRRNRRLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAE+YK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KX19 Uncharacterized protein

1.1e-84

83.41

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APVVDS P P L FDSSPVT  SLRSGGDLVLQRKSKAKS+L VSKSVDLRSSFVN G EW+  A GG +S RNQRRNRRLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A5A7TJ10 RcbX domain-containing protein

1.7e-82

80.98

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APV+DSPP P   FDSSPVT  SLRSGGDLVLQRKSK KS+  VSKSVDLRSSFVN G EW+  A G  RS RNQRRNRRLV+VNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A5D3BAI6 RcbX domain-containing protein

5.0e-82

80.49

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APV+DSPP P   FDSSPVT  SLRSGGDLVLQRKSK KS+  VSKSVDLRSSFVN G EW+  A G  +S RNQRRNRRLV+VNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A6J1FUS7 chaperonin-like RbcX protein 2, chloroplastic

1.3e-85

81.46

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  SLRS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+  A+GGHR  RNQRRNRRLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A6J1JGU0 chaperonin-like RbcX protein 2, chloroplastic

7.0e-84

79.43

Show/hide

Query:  FSPRAPVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFD
        F+  APV+DS PCP LC DSSPVT TSLRS GDLVL R+SKAKSHLAVS+ VDLRSSFVNS  EW +L+  GHR WRNQRRNRRLVVVNEFAGQYE+SFD
Subjt:  FSPRAPVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFD

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM
        DVKMQI NYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVK+CDHAEIYK IS ENLELMRERLM
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM

Query:  ETVIWPSDD
        ETVIWPSDD
Subjt:  ETVIWPSDD

SwissProt top hits

e value

%identity

Alignment

Q44212 RuBisCO chaperone RbcX

6.3e-05

32.65

Show/hide

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYN----------------FVEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL
        D    +Q+Y TY+A++TVL QL E NP    W +N                F+EK DLA R+M  R H+  + + +     +  GI   N+E  R+ L
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYN----------------FVEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL

Q8L9X2 Chaperonin-like RbcX protein 2, chloroplastic

1.2e-43

49.3

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Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWR-------RLANGGHRSWRNQRRNRRLVVVNE-FAGQYE
        +PV+DS   P LC D+   T  ++R             K  L  +++++L SSF  S   +R       R+AN         R++++L++VNE  AG Y+
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWR-------RLANGGHRSWRNQRRNRRLVVVNE-FAGQYE

Query:  DSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMR
        D+F DV+ QI NYFTYKAV+TVL+QLYEMNP QY WFYN +                 E Q+LAERVMITRLHLY KW+KKCDH +IY+ ISDENL LMR
Subjt:  DSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMR

Query:  ERLMETVIWPSDD
        ERLMETVIWPSDD
Subjt:  ERLMETVIWPSDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G19855.1 Chaperonin-like RbcX protein

8.3e-45

49.3

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWR-------RLANGGHRSWRNQRRNRRLVVVNE-FAGQYE
        +PV+DS   P LC D+   T  ++R             K  L  +++++L SSF  S   +R       R+AN         R++++L++VNE  AG Y+
Subjt:  APVVDSPPCPSLCFDSSPVTKTSLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWR-------RLANGGHRSWRNQRRNRRLVVVNE-FAGQYE

Query:  DSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMR
        D+F DV+ QI NYFTYKAV+TVL+QLYEMNP QY WFYN +                 E Q+LAERVMITRLHLY KW+KKCDH +IY+ ISDENL LMR
Subjt:  DSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMR

Query:  ERLMETVIWPSDD
        ERLMETVIWPSDD
Subjt:  ERLMETVIWPSDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTTGTTGACAATTTACATGCATTTTTTGGGAGCAAGAAAGAAAAAGAAATTAACGACGACAAATCTCAAGAATATGAAACCTTCTTTCATCTCTTTCTTGTACAATT
CCAAATTGAATTCTCGAAGTTTCAGTTTCTCACGGTAGCTGAATCTTTGACCCAATCCCCTATTCTCCAGAACCCATTTCCAGTTCTTTATATTAACTTGATTCTCTCTT
CAATTGCTTTATTACCACTCCCTAAATCCTGCTTCTCCCCACGTGCACCGGTGGTCGACTCGCCGCCGTGTCCGTCTTTGTGTTTCGACTCATCGCCGGTTACCAAAACG
AGCCTCAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCTAAGGCTAAGAGTCATTTGGCCGTGTCTAAATCGGTGGATTTGAGAAGTTCGTTTGTCAATTCAGGCGG
CGAGTGGCGGCGCTTGGCCAATGGTGGCCACCGGAGTTGGAGGAACCAAAGGAGGAATCGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTG
ATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTCCTAAATCAGCTTTATGAGATGAATCCAACACAATACAGATGGTTTTATAACTTT
GTTGAGAAGCAAGATCTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGA
GAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

mRNA sequence

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Protein sequence

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MFVDNLHAFFGSKKEKEINDDKSQEYETFFHLFLVQFQIEFSKFQFLTVAESLTQSPILQNPFPVLYINLILSSIALLPLPKSCFSPRAPVVDSPPCPSLCFDSSPVTKT
SLRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRLANGGHRSWRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNF
VEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD

CmUC02G048690 (gene) of Watermelon (USVL531) v1 genome