CuGenDBv2

Gene ID	CmUC04G068280
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RAB GTPase homolog A4D
Genome location	CmU531Chr04:1215922..1216612
RNA-Seq Expression	CmUC04G068280
Synteny	CmUC04G068280
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0080092 - regulation of pollen tube growth (biological process) GO:0005634 - nucleus (cellular component) GO:0005768 - endosome (cellular component) GO:0005794 - Golgi apparatus (cellular component) GO:0030659 - cytoplasmic vesicle membrane (cellular component) GO:0045177 - apical part of cell (cellular component) GO:0070382 - exocytic vesicle (cellular component) GO:0090404 - pollen tube tip (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function) GO:0019900 - kinase binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR001806 - Small GTPase IPR005225 - Small GTP-binding protein domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595661.1 Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-32

98.67

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

TYK00128.1 ras-related protein RABA4d [Cucumis melo var. makuwa]

2.6e-33

98.7

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESL
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQES+
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESL

XP_004150166.1 ras-related protein RABA4d [Cucumis sativus]

9.8e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

XP_008460801.1 PREDICTED: ras-related protein RABA4d [Cucumis melo]

9.8e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

XP_038881448.1 ras-related protein RABA4d [Benincasa hispida]

9.8e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KW90 Uncharacterized protein

4.7e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

A0A1S3CDP9 ras-related protein RABA4d

4.7e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

A0A5A7UD85 Ras-related protein RABA4d

4.7e-33

100

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

A0A5D3BLY9 Ras-related protein RABA4d

1.2e-33

98.7

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESL
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQES+
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESL

A0A6J1HTU8 ras-related protein RABA4d

1.1e-32

98.67

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

SwissProt top hits

e value

%identity

Alignment

Q40191 Ras-related protein Rab11A

6.8e-29

87.32

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSK+TIGVEFQT+TLVID KTVKAQIWDTAGQE
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Q40520 Ras-related protein Rab11C

4.0e-29

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFS+DSKATIGVEFQT+TLVI  K+VKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Q40522 Ras-related protein Rab11D

3.4e-28

81.33

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFS+DSKATIGVEFQT+TL I  K+VKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Q9FE79 Ras-related protein RABA4c

4.0e-29

82.67

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Q9LH50 Ras-related protein RABA4d

1.1e-34

97.33

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID KTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Arabidopsis top hits

e value

%identity

Alignment

AT1G01200.1 RAB GTPase homolog A3

1.5e-23

77.27

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Query:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIWDTAGQE
Subjt:  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

AT3G12160.1 RAB GTPase homolog A4D

7.7e-36

97.33

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSVDSKATIGVEFQTKTLVID KTVKAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

AT4G39990.1 RAB GTPase homolog A4B

2.9e-27

80.28

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++KAQIWDTAGQE
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

AT5G47960.1 RAB GTPase homolog A4C

2.8e-30

82.67

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Query:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID+KT+KAQIWDTAGQE
Subjt:  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

AT5G65270.1 RAB GTPase homolog A4A

5.3e-29

84.51

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Query:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE
        YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFS+DSKATIGVEFQT+TLVID K+VKAQIWDTAGQE
Subjt:  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQE

Sequences

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CDS sequence

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ATGTCGAATCTATATGGGGATTATAACCAGAAGATTGATTATGTTTTCAAAGTTGTGTTGATCGGAGATTCTGCTGTAGGCAAAACCCAACTCCTTGCTCGATTTTCTCG
GAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCCGGAC
AAGAAAGTCTACTCTCAATTGTAGTGTTTGGATTGGAAGGAATGTCAGTAGTGGTGAAAAACCAAGCCTTGGGAGGATATCATCTGAAGAAGTAA

mRNA sequence

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Protein sequence

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MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQESLLSIVVFGLEGMSVVVKNQALGGYHLKK

CmUC04G068280 (gene) of Watermelon (USVL531) v1 genome