; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC04G069360 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC04G069360
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationCmU531Chr04:4543072..4543426
RNA-Seq ExpressionCmUC04G069360
SyntenyCmUC04G069360
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143189.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus]1.1e-1766.2Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]3.2e-2578.38Show/hide
Query:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+VSKI SSFL++ SIN AIDSL+FLGDVG+TDL++L+ ILP+C +DQLMHIENSSKGRDLTP+TDKLWKNF
Subjt:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]4.3e-2272.97Show/hide
Query:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+VSKI SSFL++ SIN AID+L+FL DVG+TDL++L  ILP+C +DQL+HIENSSKGRDLT +TDKLWKNF
Subjt:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]8.5e-1866.2Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900481.1 transcription elongation factor B polypeptide 3-like isoform X2 [Benincasa hispida]8.5e-1866.2Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

TrEMBL top hitse value%identityAlignment
A0A0A0KGZ5 Uncharacterized protein5.4e-1866.2Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X22.7e-1763.38Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+++FLGDVG TD++LL+ ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X22.7e-1763.38Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+++FLGDVG TD++LL+ ILP+C +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1D807 transcription elongation factor B polypeptide 32.7e-1769.35Show/hide
Query:  LTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N AID+L+FLGDVG TD++LL+ ILP+C +DQLMH+E SSKGRDLTP+TDKLWK F
Subjt:  LTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1IR58 uncharacterized protein LOC1114792521.2e-1775.44Show/hide
Query:  INRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +N+AIDSL+FLGDVG TDLN L+ ILP+C +DQLMHIEN SKGRDLTP+T+KLWK F
Subjt:  INRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).1.5e-1244.44Show/hide
Query:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        E+++K   S L  L + +AID++K++G VG  D  LL+ IL +C ++QL HIE+++   DL+P+TDK WK F
Subjt:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).1.5e-1244.44Show/hide
Query:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        E+++K   S L  L + +AID++K++G VG  D  LL+ IL +C ++QL HIE+++   DL+P+TDK WK F
Subjt:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGTGTGAAAAAGTAAGTAAAATCACTTCATCCTTCCTTACTTATCTTTCCATTAACAGAGCTATAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAAT
ACCGATTTAAATCTTCTTGATCTTATTTTACCATATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGAC
AAATTATGGAAAAATTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGTGTGAAAAAGTAAGTAAAATCACTTCATCCTTCCTTACTTATCTTTCCATTAACAGAGCTATAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAAT
ACCGATTTAAATCTTCTTGATCTTATTTTACCATATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGAC
AAATTATGGAAAAATTTCTAA
Protein sequenceShow/hide protein sequence
MKMCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPYCIIDQLMHIENSSKGRDLTPLTDKLWKNF