; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC04G070330 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC04G070330
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReverse transcriptase
Genome locationCmU531Chr04:8451130..8451914
RNA-Seq ExpressionCmUC04G070330
SyntenyCmUC04G070330
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-3940.32Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C    HFKRDCPQLR     +QG  S  V Q +  T  G+ +S  RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SFVS  F   +N+ LEP  + L++ T V                                      G+DFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G R I+PT +ISA+KA K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-3943.11Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C  P HFK+DCPQL    + +QG  SQ V Q +      + +S  RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG
        AT SFVS  F   +N+ LEP  + L  +T V              G+DFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG

Query:  CKTYLAHVIKVKLEKLRPEDVPDVK
        C T+LAH++ V+ EKL+PEDVP VK
Subjt:  CKTYLAHVIKVKLEKLRPEDVPDVK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-3940.32Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C    HFKRDCPQLR     +QG  S  V Q +  T  G+ +S  RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SFVS  F   +N+ LEP  + L++ T V                                      G+DFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G R I+PT +ISA+KA K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.4e-4043.11Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C  P HFK+DCPQL    + +QG  SQ V Q +      + +S  RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG
        AT SFVS  F   +N+ LEP  + L ++T V              G+DFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG

Query:  CKTYLAHVIKVKLEKLRPEDVPDVK
        C T+LAH++ V+ EKL+PEDVP VK
Subjt:  CKTYLAHVIKVKLEKLRPEDVPDVK

TYK29162.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.9e-3638.71Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        G  + Y C    H KRDCPQLR     +QG  S  + QP+  T  G+ +S  RQ+G               QQEAE  P+V+TGT+ IC     VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSVG--------------------------------------VDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SF+S  F   +N+ LEP  + L++ T VG                                      +DFL  ++A+++  +KEV F KP   EVVF
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSVG--------------------------------------VDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G RKI+PT +ISA+K  K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.3e-3940.32Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C    HFKRDCPQLR     +QG  S  V Q +  T  G+ +S  RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SFVS  F   +N+ LEP  + L++ T V                                      G+DFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G R I+PT +ISA+KA K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

A0A5A7TI15 Reverse transcriptase1.8e-3943.11Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C  P HFK+DCPQL    + +QG  SQ V Q +      + +S  RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG
        AT SFVS  F   +N+ LEP  + L  +T V              G+DFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG

Query:  CKTYLAHVIKVKLEKLRPEDVPDVK
        C T+LAH++ V+ EKL+PEDVP VK
Subjt:  CKTYLAHVIKVKLEKLRPEDVPDVK

A0A5A7UKD3 DNA/RNA polymerases superfamily protein1.4e-3638.71Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        G  + Y C    H KRDCPQLR     +QG  S  + QP+  T  G+ +S  RQ+G               QQEAE  P+V+TGT+ IC     VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSVG--------------------------------------VDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SF+S  F   +N+ LEP  + L++ T VG                                      +DFL  ++A+++  +KEV F KP   EVVF
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSVG--------------------------------------VDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G RKI+PT +ISA+K  K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

A0A5D3BTP3 Reverse transcriptase2.3e-3940.32Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C    HFKRDCPQLR     +QG  S  V Q +  T  G+ +S  RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF
        AT SFVS  F   +N+ LEP  + L++ T V                                      G+DFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVF

Query:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV
        +G R I+PT +ISA+KA K+L KGC  +LAHV++V+ EKL+PEDVP V
Subjt:  QGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDV

A0A5D3C7J1 Reverse transcriptase3.6e-4043.11Show/hide
Query:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY C  P HFK+DCPQL    + +QG  SQ V Q +      + +S  RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG
        AT SFVS  F   +N+ LEP  + L ++T V              G+DFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRSFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKG

Query:  CKTYLAHVIKVKLEKLRPEDVPDVK
        C T+LAH++ V+ EKL+PEDVP VK
Subjt:  CKTYLAHVIKVKLEKLRPEDVPDVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAGCCAATATTTGTTACAATTGTGAACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGAT
AGTAAACCAGCCAAAGCAAGGGACAGGAACTGGTGATGCCAGTAGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGA
CTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTCGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGAT
GCTTTACTAGTACATACTTCTGTTGGCGTGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGTTGAGGT
GGTGTTTCAGGGGAGAAGAAAGATTCTTCCTACCTGTGTAATATCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAGGGTTGTAAAACGTACCTAGCACATGTAATTAAGG
TGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATCCTGCAAGTACACAGGTCAAGTTATAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGCCAATATTTGTTACAATTGTGAACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGAT
AGTAAACCAGCCAAAGCAAGGGACAGGAACTGGTGATGCCAGTAGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGA
CTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTCGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGAT
GCTTTACTAGTACATACTTCTGTTGGCGTGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGTTGAGGT
GGTGTTTCAGGGGAGAAGAAAGATTCTTCCTACCTGTGTAATATCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAGGGTTGTAAAACGTACCTAGCACATGTAATTAAGG
TGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATCCTGCAAGTACACAGGTCAAGTTATAATATAA
Protein sequenceShow/hide protein sequence
MSGANICYNCEHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQGTGTGDASSAGRQRGQQEAEKTPNVVTGTMTICSKTTYVLIDLGATRSFVSRAFAMHVNKRLEPWLD
ALLVHTSVGVDFLAKYHATIDYFKKEVRFEKPGEVEVVFQGRRKILPTCVISAVKARKMLSKGCKTYLAHVIKVKLEKLRPEDVPDVKSCKYTGQVII