; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC04G078560 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC04G078560
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionsingle-stranded DNA-binding protein, mitochondrial
Genome locationCmU531Chr04:25078958..25080967
RNA-Seq ExpressionCmUC04G078560
SyntenyCmUC04G078560
Gene Ontology termsGO:0006264 - mitochondrial DNA replication (biological process)
GO:0051096 - positive regulation of helicase activity (biological process)
GO:0042645 - mitochondrial nucleoid (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR000424 - Primosome PriB/single-strand DNA-binding
IPR011344 - Single-stranded DNA-binding protein
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137580.1 single-stranded DNA-binding protein, mitochondrial [Momordica charantia]5.6e-5684.85Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        I +S I+S  D+DSDSHSVTNRPS SPS SQSSTQTR +YNRPLENGLDAG+YKAILVGQ GQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVS+YPQRLG++VMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

XP_023000724.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima]1.5e-5687.12Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQVGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYPQRLGDVVMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

XP_023519718.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo]1.5e-5687.12Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQVGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYPQRLGDVVMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

XP_038893715.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida]2.8e-5586.36Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        ITES IES  +LDSDSHSVTN PS SPS SQSST +RT+YNRPLENGLDAGVYKAILVGQVGQSPLQK+LKSG TVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVS+YPQRLGD+VMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

XP_038895598.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida]4.3e-5687.12Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        ITES IES  DLDSDSHSVTN PS SPS SQSSTQ+RT+YNRPLENGLDAGVYKAILVGQVGQSPLQK+LKSG TVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVS+YPQRLG++VMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

TrEMBL top hitse value%identityAlignment
A0A0A0LTL6 Uncharacterized protein2.3e-5584.85Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        ITESGIESDL  + DS+SVTN+PS SPS SQS TQ R VYNRPLENGLDAG+YKAILVG+VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYP RLG++VMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

A0A1S3C3D2 single-stranded DNA-binding protein, mitochondrial1.5e-5483.33Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        ITESGIESDL  + DS+SVTN+PS SPS SQS TQ+R VY+RPLENGLDAG++KAILVG+VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYPQRLG++VMKH VPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

A0A5D3BKT6 Single-stranded DNA-binding protein1.5e-5483.33Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        ITESGIESDL  + DS+SVTN+PS SPS SQS TQ+R VY+RPLENGLDAG++KAILVG+VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYPQRLG++VMKH VPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

A0A6J1C717 single-stranded DNA-binding protein, mitochondrial2.7e-5684.85Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        I +S I+S  D+DSDSHSVTNRPS SPS SQSSTQTR +YNRPLENGLDAG+YKAILVGQ GQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVS+YPQRLG++VMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

A0A6J1KGM8 single-stranded DNA-binding protein, mitochondrial7.1e-5787.12Show/hide
Query:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE
        I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQVGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+E
Subjt:  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKE

Query:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        YANRCAVQWHRVSIYPQRLGDVVMKHVVPG I
Subjt:  YANRCAVQWHRVSIYPQRLGDVVMKHVVPGGI

SwissProt top hitse value%identityAlignment
P09380 Single-stranded DNA-binding protein 1-A, mitochondrial8.8e-0427.71Show/hide
Query:  LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPG
        L+  + K  L+G+VGQ P+ +Q +    VT+ S+ T  +  +          +   +    WHR+S++   L DV  +HV  G
Subjt:  LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPG

P09381 Single-stranded DNA-binding protein 1-B, mitochondrial5.1e-0434.12Show/hide
Query:  LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANE--EPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPG
        L+  + K  L+G+VGQ P+ +Q      VT+ S+ T  +    R   NE  +P    N+    WHRVS++   L DV  +HV  G
Subjt:  LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANE--EPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPG

Q84J78 Single-stranded DNA-binding protein, mitochondrial5.7e-1133.33Show/hide
Query:  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYA
        + G+E D +      +VT RP   P               P +     GV++AI+ G+VGQ+PLQK L++GRTVT+ ++GTGG+ + R   A  +PK   
Subjt:  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYA

Query:  NRCAVQWHRVSIYPQRLGDVVMK
             QWHR++++ + LG   ++
Subjt:  NRCAVQWHRVSIYPQRLGDVVMK

Arabidopsis top hitse value%identityAlignment
AT3G18580.1 Nucleic acid-binding, OB-fold-like protein1.7e-3961.24Show/hide
Query:  SGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYAN
        + I S  D D D       P  S  +S+ S + R +  RPLENGLD+G++KAILVGQVGQ PLQK+LKSGRTVTL S+GTGGI NNRRPL NE+P+EYA+
Subjt:  SGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYAN

Query:  RCAVQWHRVSIYPQRLGDVVMKHVVPGGI
        R AVQWHRVS+YP+RL D+V+K+V PG +
Subjt:  RCAVQWHRVSIYPQRLGDVVMKHVVPGGI

AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein4.0e-1233.33Show/hide
Query:  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYA
        + G+E D +      +VT RP   P               P +     GV++AI+ G+VGQ+PLQK L++GRTVT+ ++GTGG+ + R   A  +PK   
Subjt:  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYA

Query:  NRCAVQWHRVSIYPQRLGDVVMK
             QWHR++++ + LG   ++
Subjt:  NRCAVQWHRVSIYPQRLGDVVMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCGATCCGAAACTCAACTTTCATTACTATCCAAAATCGGAATCGGGGCGGTTCTACTTTCTGAAGGGTTCTACCTTTCTAGGATTGTCAATTACGAAGACGATGA
CCTCCATGGCTGCACTGTCAAGAAGCCTCTGCCGTTCTCTCCTGACCAATTCCAAAGTTTCTCATCCCCACCACATCCTCCCCACATCACTGAATCCGGTATTGAATCGG
ACTTGGACTTGGACTCGGACTCACATTCAGTAACTAATCGACCTTCTCCCTCACCGTCCTTGTCCCAATCGTCAACCCAGACGAGAACGGTCTATAATCGACCTCTAGAA
AATGGCCTTGATGCTGGCGTTTATAAGGCTATATTGGTGGGTCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACAGTGACGCTGTTATCAATTGG
GACGGGCGGTATTCATAATAATCGGCGACCCTTGGCTAACGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGAC
TGGGCGATGTGGTCATGAAGCATGTTGTGCCAGGGGGAATTTGGAGACCAAAATCTTCACTGATCCAGCCACTGGTCTTGTTCGACGAATTAGAGAAGTTGCCATTCGAC
GCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTAATGCTCAGCAGTCCTCTCCATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGTTTGCAGTTTTA
TCATCTGAAGGTTCGAATCACCCACTTTTCTCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCGATCCGAAACTCAACTTTCATTACTATCCAAAATCGGAATCGGGGCGGTTCTACTTTCTGAAGGGTTCTACCTTTCTAGGATTGTCAATTACGAAGACGATGA
CCTCCATGGCTGCACTGTCAAGAAGCCTCTGCCGTTCTCTCCTGACCAATTCCAAAGTTTCTCATCCCCACCACATCCTCCCCACATCACTGAATCCGGTATTGAATCGG
ACTTGGACTTGGACTCGGACTCACATTCAGTAACTAATCGACCTTCTCCCTCACCGTCCTTGTCCCAATCGTCAACCCAGACGAGAACGGTCTATAATCGACCTCTAGAA
AATGGCCTTGATGCTGGCGTTTATAAGGCTATATTGGTGGGTCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACAGTGACGCTGTTATCAATTGG
GACGGGCGGTATTCATAATAATCGGCGACCCTTGGCTAACGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGAC
TGGGCGATGTGGTCATGAAGCATGTTGTGCCAGGGGGAATTTGGAGACCAAAATCTTCACTGATCCAGCCACTGGTCTTGTTCGACGAATTAGAGAAGTTGCCATTCGAC
GCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTAATGCTCAGCAGTCCTCTCCATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGTTTGCAGTTTTA
TCATCTGAAGGTTCGAATCACCCACTTTTCTCCGTAAATGCTGTGATTTCACCTCAAATTAGTTGCAACAAGGCATTTTGAAAAGGATCTATTACATTGCGTTGGGATGA
TTCCCTTTCCCCACACCCTTTGTTAAGTGACCAATGCCTTCGATATTTATATGATTTAAATGGAATTTGAATCCGCTTTCTC
Protein sequenceShow/hide protein sequence
MVRSETQLSLLSKIGIGAVLLSEGFYLSRIVNYEDDDLHGCTVKKPLPFSPDQFQSFSSPPHPPHITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLE
NGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPGGIWRPKSSLIQPLVLFDELEKLPFD
AMAALYFWAREKVMLSSPLHQNSKVLAITKRCCLQFYHLKVRITHFSP