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CmUC04G080080 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC04G080080
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCmU531Chr04:26270649..26271461
RNA-Seq ExpressionCmUC04G080080
SyntenyCmUC04G080080
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040843.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-1833.13Show/hide
Query:  GVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEEVE-----------------------------
        G  +KE   R+L D E++ +R+KGLC  C++KY   HK K+K++++L +F++++  E  +  +  + E  E                             
Subjt:  GVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEEVE-----------------------------

Query:  --GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEEAND
          G VD+ILGMQWL S+G T   W +LT+TF   +KQI ++GDP+LTK+ + LK ++  W ++ +D
Subjt:  --GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEEAND

KAA0062448.1 disease resistance protein [Cucumis melo var. makuwa]4.6e-1728.86Show/hide
Query:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------
        + IK    KKE   PV++LSD E++ + DKGLC  C+DKY  GH+ K K  ++L  FI +++EE   +E+ ED  TEE E                    
Subjt:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------

Query:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM
                                                                                             G VDV+LGMQWL + 
Subjt:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM

Query:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE
        G+  +HWPS+TM F VG  Q+ L+GDP+LTK+E  LK I   W EE
Subjt:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE

TYK27437.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-1728.86Show/hide
Query:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------
        + IK    KKE   PV++LSD E++ + DKGLC  C+DKY  GH+ K K  ++L  FI +++EE   +E+ ED  TEE E                    
Subjt:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------

Query:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM
                                                                                             G VDV+LGMQWL + 
Subjt:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM

Query:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE
        G+  +HWPS+TM F VG  Q+ L+GDP+LTK+E  LK I   W EE
Subjt:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE

XP_031742100.1 uncharacterized protein LOC116404055 [Cucumis sativus]5.4e-1830.05Show/hide
Query:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE----------------------
        I +K    KK+ P+++LSD E++ + DKGLC  C++KY  GH+ K ++K++L L I+++EE+   +E  ED  +E +E                      
Subjt:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE----------------------

Query:  -------------------------------------------------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT
                                                               G VD++LGMQWL S G   VHWPSLTMTF +  ++I L+GDP+LT
Subjt:  -------------------------------------------------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT

Query:  KSELFLKAIVSDW
        KSE  L+ +   W
Subjt:  KSELFLKAIVSDW

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]3.2e-1829.1Show/hide
Query:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEE--------------------------
        I IK    K E PV++LSD E++ + DKGLC  C+++Y  GH+ K+K K++L LFIM++EE   D+++ E+T E                          
Subjt:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEE--------------------------

Query:  --------------------------------VE-------------------------------------------------GRVDVILGMQWLCSMGY
                                        VE                                                 G VDVILGMQWL + G 
Subjt:  --------------------------------VE-------------------------------------------------GRVDVILGMQWLCSMGY

Query:  TGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE
          +HWPSLTMTF +G KQ  L+GDP+L ++E  LK I   W E+
Subjt:  TGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE

TrEMBL top hitse value%identityAlignment
A0A1S3BIL2 uncharacterized protein LOC1034900961.1e-1629.63Show/hide
Query:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEE-----EWSDDEQPEDTE----------------------
        I +K    K E PV++LSD E++ + DKGLC  C++KY H H  K+K+K+ L LFI+++EE     E SD ++ E  E                      
Subjt:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEE-----EWSDDEQPEDTE----------------------

Query:  -----------------------------------EVE-----------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT
                                           +VE                 G+V+V+LGM+WL + G   +HWPSLTM F     ++ L+GDPAL 
Subjt:  -----------------------------------EVE-----------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT

Query:  KSELFLKAIVSDWAEE
        ++E  LK +   W +E
Subjt:  KSELFLKAIVSDWAEE

A0A5A7TCK3 Ty3/gypsy retrotransposon protein5.3e-1933.13Show/hide
Query:  GVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEEVE-----------------------------
        G  +KE   R+L D E++ +R+KGLC  C++KY   HK K+K++++L +F++++  E  +  +  + E  E                             
Subjt:  GVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEEVE-----------------------------

Query:  --GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEEAND
          G VD+ILGMQWL S+G T   W +LT+TF   +KQI ++GDP+LTK+ + LK ++  W ++ +D
Subjt:  --GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEEAND

A0A5A7V4D8 Disease resistance protein2.2e-1728.86Show/hide
Query:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------
        + IK    KKE   PV++LSD E++ + DKGLC  C+DKY  GH+ K K  ++L  FI +++EE   +E+ ED  TEE E                    
Subjt:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------

Query:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM
                                                                                             G VDV+LGMQWL + 
Subjt:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM

Query:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE
        G+  +HWPS+TM F VG  Q+ L+GDP+LTK+E  LK I   W EE
Subjt:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE

A0A5D3C063 Ty3/gypsy retrotransposon protein1.1e-1629.63Show/hide
Query:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEE-----EWSDDEQPEDTE----------------------
        I +K    K E PV++LSD E++ + DKGLC  C++KY H H  K+K+K+ L LFI+++EE     E SD ++ E  E                      
Subjt:  ISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEE-----EWSDDEQPEDTE----------------------

Query:  -----------------------------------EVE-----------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT
                                           +VE                 G+V+V+LGM+WL + G   +HWPSLTM F     ++ L+GDPAL 
Subjt:  -----------------------------------EVE-----------------GRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGDKQITLRGDPALT

Query:  KSELFLKAIVSDWAEE
        ++E  LK +   W +E
Subjt:  KSELFLKAIVSDWAEE

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein2.2e-1728.86Show/hide
Query:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------
        + IK    KKE   PV++LSD E++ + DKGLC  C+DKY  GH+ K K  ++L  FI +++EE   +E+ ED  TEE E                    
Subjt:  ISIKEGVSKKE--APVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPED--TEEVE--------------------

Query:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM
                                                                                             G VDV+LGMQWL + 
Subjt:  -------------------------------------------------------------------------------------GRVDVILGMQWLCSM

Query:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE
        G+  +HWPS+TM F VG  Q+ L+GDP+LTK+E  LK I   W EE
Subjt:  GYTGVHWPSLTMTFGVGDKQITLRGDPALTKSELFLKAIVSDWAEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCGATCAAAGAAGGGGTATCCAAGAAGGAAGCACCGGTGAGGAAATTGTCTGATGTCGAATACAAGGAGAAAAGGGATAAGGGATTGTGCTTATCTTGTGATGA
TAAGTACTTCCATGGCCATAAATTCAAGTTGAAAAAGAAGCAGCAGTTGAATTTATTTATCATGCACGATGAAGAGGAATGGAGTGACGATGAGCAACCGGAGGATACTG
AAGAGGTCGAGGGAAGGGTGGATGTCATCTTAGGGATGCAATGGCTATGCTCAATGGGATATACGGGTGTTCATTGGCCTAGTCTGACAATGACCTTTGGAGTAGGCGAC
AAGCAGATCACCTTGAGGGGAGATCCCGCACTCACGAAATCAGAGCTATTCTTGAAAGCAATAGTGAGTGATTGGGCCGAGGAAGCGAATGATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCGATCAAAGAAGGGGTATCCAAGAAGGAAGCACCGGTGAGGAAATTGTCTGATGTCGAATACAAGGAGAAAAGGGATAAGGGATTGTGCTTATCTTGTGATGA
TAAGTACTTCCATGGCCATAAATTCAAGTTGAAAAAGAAGCAGCAGTTGAATTTATTTATCATGCACGATGAAGAGGAATGGAGTGACGATGAGCAACCGGAGGATACTG
AAGAGGTCGAGGGAAGGGTGGATGTCATCTTAGGGATGCAATGGCTATGCTCAATGGGATATACGGGTGTTCATTGGCCTAGTCTGACAATGACCTTTGGAGTAGGCGAC
AAGCAGATCACCTTGAGGGGAGATCCCGCACTCACGAAATCAGAGCTATTCTTGAAAGCAATAGTGAGTGATTGGGCCGAGGAAGCGAATGATTCATAA
Protein sequenceShow/hide protein sequence
MISIKEGVSKKEAPVRKLSDVEYKEKRDKGLCLSCDDKYFHGHKFKLKKKQQLNLFIMHDEEEWSDDEQPEDTEEVEGRVDVILGMQWLCSMGYTGVHWPSLTMTFGVGD
KQITLRGDPALTKSELFLKAIVSDWAEEANDS