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CmUC05G092700 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC05G092700
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmU531Chr05:12439790..12440757
RNA-Seq ExpressionCmUC05G092700
SyntenyCmUC05G092700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032344.1 uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa]1.7e-3460.28Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+SSAL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR

KAA0058547.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]1.4e-3960Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y T++KN TKPR S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
         ++     N  +P   QISDLQ LL QLISS+SSAL VS GS S D  D+W  SQSGKIV
Subjt:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]2.4e-3651.55Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG+  K K S K   S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
         ++  A+S+D   P S Q++DL DLLKQ+ISS S+AL V+PGS  +D   +W  ++ G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

XP_016903357.1 PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo]8.8e-3959.49Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y  ++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
        I   S N  +P   QISDLQ LL  LISS+SSAL VSP S   D  D+W  SQSGKIV
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]4.1e-3650.93Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD AIQEI FEE  +GI+ S  S+V L +THS + + + FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG P K K+STK    
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
         I+  A+ +D  +P + Q++DL DLLKQ+ISS S+AL V+PGS  ++   +W+ ++ G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

TrEMBL top hitse value%identityAlignment
A0A1S3B566 uncharacterized protein LOC1034859238.3e-3560.28Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+SSAL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR

A0A1S3BBA1 uncharacterized protein LOC1034882001.2e-3651.55Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD A+QEI FEEK +GI+ S  S+V L +TH    + T FCKN  + GHKF++CP IECRYCH RGHILDN P + PR PG+  K K S K   S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
         ++  A+S+D   P S Q++DL DLLKQ+ISS S+AL V+PGS  +D   +W  ++ G I+
Subjt:  LIIIDASSND-DSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

A0A1S4E559 uncharacterized protein LOC1079921404.3e-3959.49Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL +T+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y  ++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
        I   S N  +P   QISDLQ LL  LISS+SSAL VSP S   D  D+W  SQSGKIV
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

A0A5A7SMD6 Uncharacterized protein8.3e-3560.28Show/hide
Query:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI
        L SLD AIQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH RGHIL+N P + PR   Y T++KN TKPR S +
Subjt:  LSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLSLI

Query:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR
        +  A+ ++ + L  QISDLQ LL QLISS+SSAL VS G+R
Subjt:  IIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSR

A0A5A7UUZ4 Zinc finger, CCHC-type6.6e-4060Show/hide
Query:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS
        N L SLD  IQEI FEEK +GI  SK S+VVL ST+S   + +TFCKN  + GHKF DCPKIECRYCH  GHILDN P + PR   Y T++KN TKPR S
Subjt:  NRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNSTKPRLS

Query:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV
         ++     N  +P   QISDLQ LL QLISS+SSAL VS GS S D  D+W  SQSGKIV
Subjt:  LIIIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCC
TCCAAGCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGT
CCAAAAATTGAGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCT
ACTAAACCGAGGTTGTCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATT
TCTTCCACTTCTTCTGCTCTTGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTCGCAAAGTGGGAAGATTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGTTTGTGCTACTATGCTACACTTGCAATCGTTTATCGTCTTTGGATGTGGCAATTCAAGAAATCTTCTTTGAGGAGAAACATGTGGGTATCATCCCC
TCCAAGCAGTCTGAAGTCGTTCTTGTGAGCACTCACTCAACTAATATGTCCTGGACTACTTTCTGTAAAAACTATAATATCTTTGGTCATAAGTTTAGTGACTGT
CCAAAAATTGAGTGCAGGTACTGCCACAATCGAGGTCATATTTTAGACAATTATCCCCCACAATCACCTCGACTTCCAGGTTATCCTACCAAGTCCAAAAACTCT
ACTAAACCGAGGTTGTCCTTAATCATTATTGATGCCTCCTCTAATGATGACTCTCCTCTCAGTCGTCAGATAAGTGATCTTCAAGACTTGTTAAAGCAACTAATT
TCTTCCACTTCTTCTGCTCTTGTCGTATCCCCAGGTTCAAGATCCACAGATGAAATAGACAATTGGTTCAAGTCGCAAAGTGGGAAGATTGTTTGAACTCACATC
TCTTCACCTTCCTGATCATTCGTCCATTTCTGCATCTGTCACTGACTTTGATACATATAAGTGGCATCTCTGTCTGAGTCATGCTTCTTTTAAAAAAACTTTGTC
ATTTAATTTATATTGAAAATCTAAGTAATTTTACAAAATTTGTCCATTTTCATTGTTTGAATTGCTGAAAAG
Protein sequenceShow/hide protein sequence
MNLFVLLCYTCNRLSSLDVAIQEIFFEEKHVGIIPSKQSEVVLVSTHSTNMSWTTFCKNYNIFGHKFSDCPKIECRYCHNRGHILDNYPPQSPRLPGYPTKSKNS
TKPRLSLIIIDASSNDDSPLSRQISDLQDLLKQLISSTSSALVVSPGSRSTDEIDNWFKSQSGKIV