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CmUC06G113100 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC06G113100
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Description40S ribosomal protein S21
Genome locationCmU531Chr06:5608167..5610549
RNA-Seq ExpressionCmUC06G113100
SyntenyCmUC06G113100
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575063.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia]5.6e-3267.83Show/hide
Query:  AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSA
        A MQNEEGKITELYIPRK                                SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA
Subjt:  AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSA

Query:  LDRLWQKKKAEVRQQ
        +DRLWQKKK EVRQQ
Subjt:  LDRLWQKKKAEVRQQ

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]3.3e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK EVRQQ
Subjt:  RLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]1.1e-3271.68Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKKAEVRQQ
Subjt:  RLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]2.5e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKKAEVRQQ
Subjt:  RLWQKKKAEVRQQ

XP_022959408.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata]5.6e-3267.83Show/hide
Query:  AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSA
        A MQNEEGKITELYIPRK                                SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSA
Subjt:  AKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSA

Query:  LDRLWQKKKAEVRQQ
        +DRLWQKKK EVRQQ
Subjt:  LDRLWQKKKAEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S215.5e-3371.68Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKKAEVRQQ
Subjt:  RLWQKKKAEVRQQ

A0A0A0L7W3 40S ribosomal protein S211.6e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK EVRQQ
Subjt:  RLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S211.6e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK EVRQQ
Subjt:  RLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S211.6e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK EVRQQ
Subjt:  RLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S211.2e-3270.8Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGKITELYIPRK                                SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKKAEVRQQ
Subjt:  RLWQKKKAEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S213.5e-2958.41Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEG++ +LY+PRK                                SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQK+KAEV+QQ
Subjt:  RLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-28.4e-3160.71Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEG++TELYIPRK                                SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +D
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQ
        RLWQKKK E +Q
Subjt:  RLWQKKKAEVRQ

Q41852 40S ribosomal protein S213.0e-2857.14Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEGK  +LY+PRK                                SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LD
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQ
        RLWQKKKAE++Q
Subjt:  RLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-11.2e-2957.52Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        M+N+ G++TELYIPRK                                SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +D
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK E +QQ
Subjt:  RLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S213.3e-1947.17Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSAL
        MQN+EGKI +LYIPRK                                SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSAL

Query:  DRLWQK
        +RL  K
Subjt:  DRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e8.6e-3157.52Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        M+N+ G++TELYIPRK                                SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +D
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK E +QQ
Subjt:  RLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e8.6e-3157.52Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        M+N+ G++TELYIPRK                                SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +D
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQQ
        RLWQKKK E +QQ
Subjt:  RLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e6.0e-3260.71Show/hide
Query:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD
        MQNEEG++TELYIPRK                                SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +D
Subjt:  MQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALD

Query:  RLWQKKKAEVRQ
        RLWQKKK E +Q
Subjt:  RLWQKKKAEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTAT
TTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACA
TTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGG
CAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGTTATTTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTACGTAATCAGCACATTTTGTTTGTTATTTTACACTAT
TTTCATTTTTGTGTCCAACCCTTTTCTGAATTTGTTTGTGGCATCTGATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCGGTTCAGATTAACA
TTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGTGGTTTCATCCGTGCTCAGGGAGACGCGGACAGTGCTTTGGATAGGTTGTGG
CAGAAGAAAAAAGCAGAAGTTCGCCAACAGTAGAAAGTGGAAATTTTCTTCTACTTGAAATTTTATGTTTCTAATTAAGTTTAGTTTTATTGCGAATTATGAATGTTGAG
AGAGCCTAGCCTGCCTTTGCTTCTAAAGTTGTAGTGTTTGTTGGAATCTTCATTCGGTGAAGCTGGTTTTTGATCATTTATTAGTGGATTTATTCACATTTCCGTGTTTC
ATTTAATATCATTTTCATTTTCTAGCACCTTCCTCCTTTTTTTGGGTTTGGGATTTCAAGTTTTACCCTCAAATGAAACGACGACTGTGTTGGTTAAATTTAATATTTTC
AAATACCTTTTATATTTTTATCTTTTTGTTTCTTAAGATTTTAGTTCATACTTGTGTAATTGTATCAATTAATTATTAGTTTAGAG
Protein sequenceShow/hide protein sequence
MGCYLAKMQNEEGKITELYIPRKWYVISTFCLLFYTIFIFVSNPFLNLFVASDFSSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLW
QKKKAEVRQQ