CuGenDBv2

Gene ID	CmUC07G128200
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	zinc finger HIT domain-containing protein 3
Genome location	CmU531Chr07:1667901..1671406
RNA-Seq Expression	CmUC07G128200
Synteny	CmUC07G128200
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000492 - box C/D snoRNP assembly (biological process) GO:0048254 - snoRNA localization (biological process) GO:0005634 - nucleus (cellular component) GO:0070761 - pre-snoRNP complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007529 - Zinc finger, HIT-type IPR040197 - Zinc finger HIT domain-containing protein 3

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]

1.9e-29

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        M PRKCQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPC  KPVS GD+ TA NG+ VDRPI VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]

1.5e-29

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        M PR+CQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPC  KPVS  D+ TAPNGS VDRPI VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]

6.7e-30

77.78

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        MGPR+CQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPCV KPVSAGD+ TAPNGSLVDRPI V DQ+E+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

XP_031743372.1 zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus]

1.9e-29

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        M PRKCQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPC  KPVS GD+ TA NG+ VDRPI VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]

3.8e-33

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        MGPR+CQVCNEAPSKYKCP CL PYCSLVCFKKHK       EVPC  +PVSAGD+PTAPNGSLVDRPIYV DQNEILEKLQLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDK5 HIT-type domain-containing protein

9.4e-30

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        M PRKCQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPC  KPVS GD+ TA NG+ VDRPI VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X1

7.2e-30

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        M PR+CQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPC  KPVS  D+ TAPNGS VDRPI VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X1

3.2e-30

77.78

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        MGPR+CQVCNEAPSKYKCP CLAPYCSLVCFKKHK       EVPCV KPVSAGD+ TAPNGSLVDRPI V DQ+E+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

A0A6J1ESW0 zinc finger HIT domain-containing protein 3

2.1e-29

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        MGPR+CQVCNEAPSKYKCP CL PYCSLVCFKKHK       EVPCV KPVSA D+  APNGS VDRP++VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

A0A6J1JZX2 zinc finger HIT domain-containing protein 3

2.1e-29

74.44

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Query:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS
        MGPR+CQVCNEAPSKYKCP CL PYCSLVCFKKHK       EVPCV KPVSA D+  APNGS VDRP++VGDQNE+LEK QLEAI + S
Subjt:  MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

SwissProt top hits

e value

%identity

Alignment

O36031 Uncharacterized zinc-finger protein C4F10.19c

2.7e-05

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK
        C +CNE+  KYKCP+C  PYCSL C+K H+
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK

Q15649 Zinc finger HIT domain-containing protein 3

3.5e-05

63.33

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK
        C +C E P KY+CP C  PYCS+VCF+KHK
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK

Q2KIH1 Zinc finger HIT domain-containing protein 3

4.1e-06

55.81

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Query:  GPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEV
        G   C VC E P KY+CP C  PYCSL CF+KHK   L  L V
Subjt:  GPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEV

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)

1.0e-04

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK
        C +C E P KY+CP C  PYCS+ CF+KHK
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK

Q9CQK1 Zinc finger HIT domain-containing protein 3

1.7e-04

63.33

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK
        C VC E P KY+CP C  PYCS+ CF+KHK
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHK

Arabidopsis top hits

e value

%identity

Alignment

AT4G28820.1 HIT-type Zinc finger family protein

3.3e-11

40.54

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKH----------------KGAVLLDLEVPCVTKPVSAGD--EPTAPNGSL--------VDRPIYVGDQNEILE
        C++C +  SKYKCP CL PYCSL CFK H                K A     EVP V +P  A D  E T    S         V RPI V ++  ILE
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKH----------------KGAVLLDLEVPCVTKPVSAGD--EPTAPNGSL--------VDRPIYVGDQNEILE

Query:  KLQLEAIGNYS
        K Q EAI + S
Subjt:  KLQLEAIGNYS

AT4G28820.2 HIT-type Zinc finger family protein

1.5e-11

35.34

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Query:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCV--TKPVSAGDEPTAPNGSL-----------------------------VDRPIYVGDQ
        C++C +  SKYKCP CL PYCSL CFK HK       E PC   + P S  ++P +P   +                             V RPI V ++
Subjt:  CQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCV--TKPVSAGDEPTAPNGSL-----------------------------VDRPIYVGDQ

Query:  NEILEKLQLEAIGNYS
          ILEK Q EAI + S
Subjt:  NEILEKLQLEAIGNYS

Sequences

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CDS sequence

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ATGGGTCCTCGCAAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCAATGCCTTGCACCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGGTGC
TGTTCTTTTGGACTTGGAAGTGCCCTGTGTCACCAAACCTGTGTCTGCAGGGGACGAACCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATATGTTGGAGATC
AGAATGAAATACTTGAAAAGTTGCAGCTAGAGGCTATTGGTAATTATTCATAA

mRNA sequence

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CAACTTTGTAATGGTACACGACCACGTTTTTTTATTTTTATGGGTGGGGCTCCTGAATTTGACCGCGAGAAACAAAGTATATGCGAGTATATATGGAAGTAGGTAAGAAA
TAGAGTACCTAAAATGATATTTTAATTATTGTTATTTTTTAAATTCAAAATTATTTTTATTATTAATATCATTATTTTAATTTCTATTCCTTTTTATGAACCGAAAACTC
CTTTTTAGAGTATTTGGGTTTTGTCAAAAACCCTCCGGTGAAGCCAGGCGCCAAACTCCCTCCGTGATTAAGAACCAAGTTGTAGTTCGAGTAACAGCTATAGCATTAGT
TATTCTGCATTTGAGATTAAGCAATTGAAAGAAATTGAACATTCTATGGGTCCTCGCAAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCAATGCCT
TGCACCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGGTGCTGTTCTTTTGGACTTGGAAGTGCCCTGTGTCACCAAACCTGTGTCTGCAGGGGACGAACCAACTG
CTCCTAATGGATCACTTGTAGATAGGCCAATATATGTTGGAGATCAGAATGAAATACTTGAAAAGTTGCAGCTAGAGGCTATTGGTAATTATTCATAA

Protein sequence

Show/hide protein sequence

MGPRKCQVCNEAPSKYKCPQCLAPYCSLVCFKKHKGAVLLDLEVPCVTKPVSAGDEPTAPNGSLVDRPIYVGDQNEILEKLQLEAIGNYS

CmUC07G128200 (gene) of Watermelon (USVL531) v1 genome