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CmUC08G143190 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC08G143190
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCmU531Chr08:1269303..1269794
RNA-Seq ExpressionCmUC08G143190
SyntenyCmUC08G143190
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054754.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.7e-2149.19Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVISLGAELLKIQQDGTYEDYLKKFVAYSALFPELSK
        MK+K + +E +     +    D+SKYK LE+ +F   NPESW+Y+AE +F+I+ L   KK+KV V SLGA L++IQQDG+Y +Y+KKFV YSA  P +++
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVISLGAELLKIQQDGTYEDYLKKFVAYSALFPELSK

Query:  SVLKDAFLNELAPKLHIEVASQRP
        SVL+DAFL  L   L  EV S+ P
Subjt:  SVLKDAFLNELAPKLHIEVASQRP

KAA0063772.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-2044.6Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI---------------SLGAELLKIQQDGTYEDYL
        MKMK + +E       +    D+SKYK L+M +F   NPESW+Y+AE +FEI+ L   +K+KV V+               SLGA L++IQQ+G+Y DY+
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI---------------SLGAELLKIQQDGTYEDYL

Query:  KKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
        KKFV YSA  P +++SVL DAF+  L P L  EV S+ P
Subjt:  KKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

TYK23012.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.3e-2045.19Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI-----------SLGAELLKIQQDGTYEDYLKKFV
        +K K++  E   +   + G +++SKYK LE+ VF+  NPE+W+Y+AE YF+I+EL++ +K+KVVV+           SLGA L++I+QD  Y+D LKKF+
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI-----------SLGAELLKIQQDGTYEDYLKKFV

Query:  AYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
         YSA  PE++KSVL DAF+  L   L  EV S+ P
Subjt:  AYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

XP_038891356.1 uncharacterized protein LOC120080793 isoform X1 [Benincasa hispida]4.4e-2444.79Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------
        MKMK +  EA+S+ S   GGA+KSKYK LE+ +F   NPESW+Y+AE Y EIHELS+ +K+KV VI                                  
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------

Query:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
             SLGA LL+I+QD +Y DY+KKFV YS   P+L + VLKDAF+N L P L  EV S++P
Subjt:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

XP_038893564.1 uncharacterized protein LOC120082453 [Benincasa hispida]1.5e-2444.44Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------
        MKMK+ + E  S+ S   GG+DKSKYK LE+ +F   NPESW+Y+AE YFEI+ELS+ +K+KVVVI                                  
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------

Query:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQR
             SL A LL+I+Q+G+Y DY+KKFV YSA  P+L++ VLKDAF+N L P L +EV S++
Subjt:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQR

TrEMBL top hitse value%identityAlignment
A0A5A7T3B8 Retrotransposon protein3.2e-2040.49Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------
        +K K +  E + + S + G +DKS YK LEM VF+  NPESW+YQA+ YF+I+EL++ +K+KVVV+                                  
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------

Query:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
             SLGA L++I+QDG Y DYLKKF+ YSA  PE+++SVL DAF+  L   L  EV S+ P
Subjt:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

A0A5A7UHY0 Transposon Ty3-G Gag-Pol polyprotein1.3e-2149.19Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVISLGAELLKIQQDGTYEDYLKKFVAYSALFPELSK
        MK+K + +E +     +    D+SKYK LE+ +F   NPESW+Y+AE +F+I+ L   KK+KV V SLGA L++IQQDG+Y +Y+KKFV YSA  P +++
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVISLGAELLKIQQDGTYEDYLKKFVAYSALFPELSK

Query:  SVLKDAFLNELAPKLHIEVASQRP
        SVL+DAFL  L   L  EV S+ P
Subjt:  SVLKDAFLNELAPKLHIEVASQRP

A0A5A7UT21 Ty3/gypsy retrotransposon protein4.2e-2039.88Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------
        MKMK + +E + +G       D+SKYK LEM +F   NPESW+Y+AE +FEI+ L   +K+KV V+                                  
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI----------------------------------

Query:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
             SLGA L++IQQ+G+Y DY+KKFV YSA  P +++SVL+DAFL  L P L  EV S+ P
Subjt:  -----SLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

A0A5A7V689 Retrotransposon protein1.4e-2044.6Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI---------------SLGAELLKIQQDGTYEDYL
        MKMK + +E       +    D+SKYK L+M +F   NPESW+Y+AE +FEI+ L   +K+KV V+               SLGA L++IQQ+G+Y DY+
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI---------------SLGAELLKIQQDGTYEDYL

Query:  KKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
        KKFV YSA  P +++SVL DAF+  L P L  EV S+ P
Subjt:  KKFVAYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

A0A5D3DHI3 Transposon Tf2-6 polyprotein6.5e-2145.19Show/hide
Query:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI-----------SLGAELLKIQQDGTYEDYLKKFV
        +K K++  E   +   + G +++SKYK LE+ VF+  NPE+W+Y+AE YF+I+EL++ +K+KVVV+           SLGA L++I+QD  Y+D LKKF+
Subjt:  MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVI-----------SLGAELLKIQQDGTYEDYLKKFV

Query:  AYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP
         YSA  PE++KSVL DAF+  L   L  EV S+ P
Subjt:  AYSALFPELSKSVLKDAFLNELAPKLHIEVASQRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGAAGAAGGAAAGCAAAGAAGCAAACTCATCAGGCAGTAAGAGTCAAGGAGGTGCCGACAAAAGTAAGTATAAAAGCCTGGAGATGTCGGTGTTTGACAGAAA
CAACCCCGAGTCATGGCTGTATCAAGCCGAAATGTACTTCGAAATACACGAGTTATCTAATCCGAAAAAGTTAAAGGTGGTGGTGATTAGCCTAGGAGCCGAACTATTGA
AGATCCAACAAGATGGAACATACGAAGACTATTTGAAGAAGTTCGTCGCATATTCGGCTCTATTCCCAGAGTTGTCGAAAAGCGTGCTAAAAGATGCATTCCTGAACGAA
TTAGCTCCAAAACTTCACATCGAAGTGGCCAGCCAGCGACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGAAGAAGGAAAGCAAAGAAGCAAACTCATCAGGCAGTAAGAGTCAAGGAGGTGCCGACAAAAGTAAGTATAAAAGCCTGGAGATGTCGGTGTTTGACAGAAA
CAACCCCGAGTCATGGCTGTATCAAGCCGAAATGTACTTCGAAATACACGAGTTATCTAATCCGAAAAAGTTAAAGGTGGTGGTGATTAGCCTAGGAGCCGAACTATTGA
AGATCCAACAAGATGGAACATACGAAGACTATTTGAAGAAGTTCGTCGCATATTCGGCTCTATTCCCAGAGTTGTCGAAAAGCGTGCTAAAAGATGCATTCCTGAACGAA
TTAGCTCCAAAACTTCACATCGAAGTGGCCAGCCAGCGACCATAA
Protein sequenceShow/hide protein sequence
MKMKKESKEANSSGSKSQGGADKSKYKSLEMSVFDRNNPESWLYQAEMYFEIHELSNPKKLKVVVISLGAELLKIQQDGTYEDYLKKFVAYSALFPELSKSVLKDAFLNE
LAPKLHIEVASQRP