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CmUC08G145950 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC08G145950
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCmU531Chr08:10747955..10748486
RNA-Seq ExpressionCmUC08G145950
SyntenyCmUC08G145950
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068064.1 polygalacturonase [Cucumis melo var. makuwa]3.2e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

TYK06443.1 polygalacturonase [Cucumis melo var. makuwa]3.2e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

XP_008460449.1 PREDICTED: polygalacturonase-like [Cucumis melo]3.2e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

XP_011652823.2 polygalacturonase [Cucumis sativus]1.9e-2487.88Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATKVAVKFDCS  NPC RIKLE VKL+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

XP_011652824.2 polygalacturonase [Cucumis sativus]4.1e-2486.36Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATKVAVKFDCS  NPC RIKL+ VKL+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

TrEMBL top hitse value%identityAlignment
A0A0A0LCF2 Uncharacterized protein9.0e-2587.88Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATKVAVKFDCS  NPC RIKLE VKL+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

A0A1S3CCL4 polygalacturonase-like1.5e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

A0A5A7VKX0 Polygalacturonase1.5e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

A0A5D3C3E8 Polygalacturonase1.5e-2484.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATK+AVKFDCS TNPC  IKLE V+L+YMNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

A0A5D3DTW1 Polygalacturonase1.0e-2384.85Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF
        NDVTYQ+IHGTSATKVAVKFDCS TNPC  IKLE V+L++MNQ AQATCNNVGGIA GLVQPTSCF
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438608.7e-0944.62Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        ++V Y++IHGTS T+VAV  DCS   PC  I ++ V L  +++ AQA+C+N  G A  +V  T C
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC

P05117 Polygalacturonase-22.8e-0751.92Show/hide
Query:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKL-SYMNQIAQATCNNV
        +V Y+NI GTSATKVA+KFDCS   PC  I +E + L     + ++ATC NV
Subjt:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKL-SYMNQIAQATCNNV

P35336 Polygalacturonase2.8e-0750Show/hide
Query:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYM-NQIAQATCNNVGGIATGLVQP
        +V YQNI GT A+ VA+ FDCS   PC  I LE V L       A+A CNNV    TG+V P
Subjt:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYM-NQIAQATCNNVGGIATGLVQP

P35339 Exopolygalacturonase1.8e-0638.81Show/hide
Query:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSY--MNQIAQATCNNVGGIATGLVQPTSCF
        DVT++NI GTS+T  AV   C+A  PC  + ++ V + Y   N    A C N  G A G ++  +CF
Subjt:  DVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSY--MNQIAQATCNNVGGIATGLVQPTSCF

P48979 Polygalacturonase1.6e-1863.08Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        +DVTY++IHGTSAT+VAVKFDCS  +PC  IKLE VKL+Y NQ A+++C++  G   G+VQPTSC
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC

Arabidopsis top hitse value%identityAlignment
AT1G65570.1 Pectin lyase-like superfamily protein5.1e-1244.62Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        NDV Y  I GTSAT++A+K DCS   PC  I+++ + L+   + A+ +C NV G   GLV P+ C
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC

AT2G43870.1 Pectin lyase-like superfamily protein5.4e-1453.23Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQP
        +DV + +IHGTSAT+V VK DCS+  PC  I+LE VKL+Y N+ A + C + GGI  G  QP
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQP

AT2G43880.1 Pectin lyase-like superfamily protein2.5e-1142.86Show/hide
Query:  VTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        VT+ NI GTS T +A+K DCS +N C  ++L+ +KL+YM + + + C N  G A+G++ P +C
Subjt:  VTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC

AT2G43890.1 Pectin lyase-like superfamily protein6.0e-1344.62Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        + V Y+NI GTS T+ A+ FDCS +NPC  I+L  +KL++  + A +TC N+ G+  G+V P  C
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC

AT3G59850.1 Pectin lyase-like superfamily protein3.5e-1347.69Show/hide
Query:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC
        +DV + +IHGTSAT+V VK DCS+  PC  I+++ VKL+Y N+ A   C++ GG   G  +P SC
Subjt:  NDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACGACGTGACATACCAAAACATTCATGGAACATCAGCTACAAAAGTTGCAGTAAAATTTGATTGTAGTGCAACAAATCCGTGCAATCGAATAAAGTTGGAGTA
TGTAAAGCTTAGTTATATGAATCAAATAGCCCAAGCAACGTGCAACAATGTTGGAGGGATTGCAACAGGTCTTGTTCAGCCTACTAGTTGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACGACGTGACATACCAAAACATTCATGGAACATCAGCTACAAAAGTTGCAGTAAAATTTGATTGTAGTGCAACAAATCCGTGCAATCGAATAAAGTTGGAGTA
TGTAAAGCTTAGTTATATGAATCAAATAGCCCAAGCAACGTGCAACAATGTTGGAGGGATTGCAACAGGTCTTGTTCAGCCTACTAGTTGCTTTTAG
Protein sequenceShow/hide protein sequence
MGNDVTYQNIHGTSATKVAVKFDCSATNPCNRIKLEYVKLSYMNQIAQATCNNVGGIATGLVQPTSCF