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CmUC09G172700 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC09G172700
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRhamnogalacturonan endolyase
Genome locationCmU531Chr09:14898654..14900563
RNA-Seq ExpressionCmUC09G172700
SyntenyCmUC09G172700
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622856.1 Hexokinase-4 [Capsicum annuum]1.1e-0476.47Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
        EP  YEEAKGCP WE  MQEEID L  NETWELV
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
KAF3653575.1 putative receptor-like cytosolic serine/threonine-protein kinase RBK1-like [Capsicum annuum]1.7e-0553.33Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
        EP  YEEAKGCP WE  MQEEID L+ NETWELV        VT   +F+    +NG I+
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
PHT64859.1 hypothetical protein T459_29284 [Capsicum annuum]1.7e-0553.33Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
        EP  YEEAKGCP WE  MQEEID L+ NETWELV        VT   +F+    +NG I+
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
PHT81584.1 hypothetical protein T459_14599 [Capsicum annuum]7.3e-0470.59Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
        EP  Y+EAKGCP WE  MQE+I TL  NETWELV
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
XP_039136773.1 uncharacterized mitochondrial protein AtMg00810-like [Dioscorea cayenensis subsp. rotundata]5.6e-0472.73Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWEL
        EPT Y EAKGCP WE  MQEEI+ L  NETWEL
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWEL
TrEMBL top hitse value%identityAlignment
A0A1J6IR97 Uncharacterized protein3.5e-0452Show/hide
Query:  HATMACGVLSLWRLAREPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
        H+  +C         +EP  YEEAK  P WE  MQEEID L  NETWELV
Subjt:  HATMACGVLSLWRLAREPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
A0A2G2Y588 Rhamnogalacturonan endolyase8.4e-0653.33Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
        EP  YEEAKGCP WE  MQEEID L+ NETWELV        VT   +F+    +NG I+
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV-------NVTNTKIFKPTSHANGFIN
A0A2G2Z219 Uncharacterized protein3.5e-0470.59Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
        EP CYEEAKGC  WE  MQEEI++L  N+TWELV
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
A0A2G2ZI20 Uncharacterized protein3.5e-0470.59Show/hide
Query:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
        EP  Y+EAKGCP WE  MQE+I TL  NETWELV
Subjt:  EPTCYEEAKGCPEWEADMQEEIDTLKINETWELV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGCATTGACCATGAAAACGAAAGCGATGGCGTGCGTCGGGAAACGCATCTCCGACGACGTGAGGCGATGGTGTACGACAGTGGCGTTCGGCAATGGGAA
GCGTTGCTGGAGCAGATCTACGGCAGCAGCGGTGGCGTTAGGTGGCCTGCGGCGTCAGGCGTCAAGCATGCGGTCTCAGGCATCAAACGTGCGGCATCGGACTGC
AGGTGTGCGGCGTCGAGCGTTAGGCGTGCGACGTTGGGCATCAGGCTTACAACTTCAAGCATCAGGCCTGCAGCATTTGGCGTCAGGCGTGAGGCGTGCGATGGT
GGCGTCCGGCATGCCACAATGGCGTGTGGCGTGCTGTCTCTATGGCGGCTAGCTAGGGAGCCTACTTGCTATGAAGAAGCCAAAGGTTGTCCAGAATGGGAGGCA
GACATGCAAGAAGAGATTGATACTTTAAAAATAAATGAGACATGGGAGCTTGTTAATGTTACCAATACCAAAATATTCAAACCCACTTCACATGCAAATGGGTTT
ATCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGCATTGACCATGAAAACGAAAGCGATGGCGTGCGTCGGGAAACGCATCTCCGACGACGTGAGGCGATGGTGTACGACAGTGGCGTTCGGCAATGGGAA
GCGTTGCTGGAGCAGATCTACGGCAGCAGCGGTGGCGTTAGGTGGCCTGCGGCGTCAGGCGTCAAGCATGCGGTCTCAGGCATCAAACGTGCGGCATCGGACTGC
AGGTGTGCGGCGTCGAGCGTTAGGCGTGCGACGTTGGGCATCAGGCTTACAACTTCAAGCATCAGGCCTGCAGCATTTGGCGTCAGGCGTGAGGCGTGCGATGGT
GGCGTCCGGCATGCCACAATGGCGTGTGGCGTGCTGTCTCTATGGCGGCTAGCTAGGGAGCCTACTTGCTATGAAGAAGCCAAAGGTTGTCCAGAATGGGAGGCA
GACATGCAAGAAGAGATTGATACTTTAAAAATAAATGAGACATGGGAGCTTGTTAATGTTACCAATACCAAAATATTCAAACCCACTTCACATGCAAATGGGTTT
ATCAATTGA
Protein sequenceShow/hide protein sequence
MLSIDHENESDGVRRETHLRRREAMVYDSGVRQWEALLEQIYGSSGGVRWPAASGVKHAVSGIKRAASDCRCAASSVRRATLGIRLTTSSIRPAAFGVRREACDG
GVRHATMACGVLSLWRLAREPTCYEEAKGCPEWEADMQEEIDTLKINETWELVNVTNTKIFKPTSHANGFIN