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CmUC09G173000 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC09G173000
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibonuclease H
Genome locationCmU531Chr09:16444504..16444908
RNA-Seq ExpressionCmUC09G173000
SyntenyCmUC09G173000
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032022.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]3.2e-5270.9Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y L ASEN K TIR+L M FF NG+VLYKRN DMTLL+CVDA EA++ILEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCG H NGHMM+RQVLRA Y+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

KAA0033220.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]2.4e-5269.4Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E++PD K WYHDIKHYI  + Y  G SEN KRT+R+L M FF +G+VLYKRN DMTLLRCVDA +AK+ LEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NGHMM+RQ+LRAGY+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

KAA0046609.1 hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]1.7e-5372.39Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y  GASEN KRTIR+L M FF +G+VLYKRN DMTLLRCVDA EAK  LEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NGHMM+RQ+LRAGY+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

TYK10941.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]1.0e-5069.4Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA  +E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y  GASEN KRTI++L M FF +G VLYKRN DMTLLRCVDA E+++ILEE 
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NG+MM+RQVLR+GY+WLTME DCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

XP_038874966.1 uncharacterized protein LOC120067484 [Benincasa hispida]9.3e-5276.12Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNV  N+EIQ ISIEK EA AYC+S++QE D K WY+DIKHYIT + Y LGAS+N K TIRKLVMSFF NG+VLYKRN DM+LLRCVDASEAKRIL EV
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEG+C TH NGHMM+ QVL A YYWLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

TrEMBL top hitse value%identityAlignment
A0A5A7SLW0 RNA-directed DNA polymerase1.5e-5270.9Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y L ASEN K TIR+L M FF NG+VLYKRN DMTLL+CVDA EA++ILEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCG H NGHMM+RQVLRA Y+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

A0A5A7SQN1 Ribonuclease H1.2e-5269.4Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E++PD K WYHDIKHYI  + Y  G SEN KRT+R+L M FF +G+VLYKRN DMTLLRCVDA +AK+ LEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NGHMM+RQ+LRAGY+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

A0A5A7T2W3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H8.5e-5169.4Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y  GAS+N KRTI++L M FF +G VLYKRN DMTLLRCVDA EA+ ILEE 
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NG+MM+RQVLR+GY+WLTME DCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

A0A5A7TZF3 Ribonuclease H8.2e-5472.39Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA ++E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y  GASEN KRTIR+L M FF +G+VLYKRN DMTLLRCVDA EAK  LEE+
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NGHMM+RQ+LRAGY+WLTMESDCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

A0A5D3CGL1 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H5.0e-5169.4Show/hide
Query:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV
        MFNVA  +E+QPI +EK++ P+YC+S+E+EPD K WYHDIKHYI  + Y  GASEN KRTI++L M FF +G VLYKRN DMTLLRCVDA E+++ILEE 
Subjt:  MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEV

Query:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK
        HEGVCGTH NG+MM+RQVLR+GY+WLTME DCIK
Subjt:  HEGVCGTHTNGHMMSRQVLRAGYYWLTMESDCIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATGTGGCTCGTAATAAAGAAATTCAACCTATAAGTATTGAGAAGCATGAAGCACCAGCATATTGCCTAAGTGTTGAGCAGGAACCTGACAGGAAGCTTTGGTA
TCATGACATTAAGCACTACATCACATGTCAAGCATATCTGCTAGGAGCTTCTGAAAACGATAAGCGCACCATTAGAAAGTTGGTCATGAGTTTCTTTTTTAATGGAGATG
TGTTATACAAAAGAAATTGCGATATGACTCTCCTGAGATGTGTTGATGCTTCGGAAGCCAAGAGAATTCTAGAAGAAGTTCACGAGGGAGTTTGTGGGACGCATACAAAT
GGACACATGATGTCAAGACAAGTTTTACGTGCCGGATATTATTGGTTGACTATGGAGTCAGATTGCATTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAATGTGGCTCGTAATAAAGAAATTCAACCTATAAGTATTGAGAAGCATGAAGCACCAGCATATTGCCTAAGTGTTGAGCAGGAACCTGACAGGAAGCTTTGGTA
TCATGACATTAAGCACTACATCACATGTCAAGCATATCTGCTAGGAGCTTCTGAAAACGATAAGCGCACCATTAGAAAGTTGGTCATGAGTTTCTTTTTTAATGGAGATG
TGTTATACAAAAGAAATTGCGATATGACTCTCCTGAGATGTGTTGATGCTTCGGAAGCCAAGAGAATTCTAGAAGAAGTTCACGAGGGAGTTTGTGGGACGCATACAAAT
GGACACATGATGTCAAGACAAGTTTTACGTGCCGGATATTATTGGTTGACTATGGAGTCAGATTGCATTAAGTAA
Protein sequenceShow/hide protein sequence
MFNVARNKEIQPISIEKHEAPAYCLSVEQEPDRKLWYHDIKHYITCQAYLLGASENDKRTIRKLVMSFFFNGDVLYKRNCDMTLLRCVDASEAKRILEEVHEGVCGTHTN
GHMMSRQVLRAGYYWLTMESDCIK