CuGenDBv2

Gene ID	CmUC09G175100
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CmU531Chr09:26907543..26908530
RNA-Seq Expression	CmUC09G175100
Synteny	CmUC09G175100
Gene Ontology terms	NA
InterPro domains	IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-64

47.04

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Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

TYK27058.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

TYK27963.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BBH7 Ty3/gypsy retrotransposon protein

2.6e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

A0A5D3DU86 Ty3/gypsy retrotransposon protein

2.6e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

A0A5D3DWA9 Ty3/gypsy retrotransposon protein

2.6e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

A0A5D3DZK6 Ty3/gypsy retrotransposon protein

2.6e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

A0A5D3E325 Ty3/gypsy retrotransposon protein

2.6e-64

47.04

Show/hide

Query:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------
        GL+GFLGLTGYYRRFVK YG +AAPLT+LL K+AFKW    T AF +LKS                                                  
Subjt:  GLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSG-------------------------------------------------

Query:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH
                              ++   +FT++SDQ ALKF+L+QREVQPQFQ+W TKL+GYDFEI YQP   NKAADALSRM  + EL  L    ++D+ 
Subjt:  ---------------------DHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPPNAELITLVAPSLLDVH

Query:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ
         + +EV +D +LQ + Q+L+ +P    K SL  G L+YKGR+VLSK+SSII +L+ TFHD +LGGH GFL TYKRM+GEL WKGMKED+KK+V +C+ CQ
Subjt:  KIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMAGELRWKGMKEDVKKHVAKCDNCQ

Query:  KNKS
        +NKS
Subjt:  KNKS

SwissProt top hits

e value

%identity

Alignment

P92523 Uncharacterized mitochondrial protein AtMg00860

9.3e-11

62.5

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Query:  LKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALK
        L+GFLGLTGYYRRFVK+YG +  PLT+LL K++ KW+     AF ALK
Subjt:  LKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

3.7e-07

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Query:  LKGFLGLTGYYRRFVKDYGAVAAPLTQL---------------------------------------------------LHKDAFKWS------------
        LK FLG+T YYR+F++DY  VA PLT L                                                   L  DA  W+            
Subjt:  LKGFLGLTGYYRRFVKDYGAVAAPLTQL---------------------------------------------------LHKDAFKWS------------

Query:  -----------NQTTEAFNAL-KSGDHICW------------GKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPP
                   N+T E +  + K    I W            G   V +D   L F L  R    + +RW+ ++  Y+ E+ Y+P KSN  ADALSR+PP
Subjt:  -----------NQTTEAFNAL-KSGDHICW------------GKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQP-KSNKAADALSRMPP

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.6e-12

62.5

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Query:  LKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALK
        L+GFLGLTGYYRRFVK+YG +  PLT+LL K++ KW+     AF ALK
Subjt:  LKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCATTACTTGGGACTCAAGGGGTTCCTTGGTCTCACGGGCTACTACAGAAGATTTGTGAAGGATTATGGCGCAGTGGCTGCTCCATTGACCCAATTATTGCAT
AAGGATGCCTTCAAATGGTCTAACCAAACTACTGAAGCTTTCAATGCTCTCAAAAGTGGAGACCATATTTGTTGGGGCAAGTTCACAGTAATATCCGATCAAAAT
GCATTAAAATTTATGCTCAAACAACGTGAAGTTCAGCCTCAATTTCAGCGGTGGCGAACCAAATTGATGGGTTATGATTTTGAGATCTTTTATCAACCCAAGTCG
AACAAGGCAGCGGACGCCCTATCGAGGATGCCACCAAATGCAGAATTAATAACTTTAGTGGCTCCTTCACTACTTGATGTTCACAAGATCCAACAAGAAGTCAGG
GAAGATGTTCAATTACAAAAAGTTCCACAAAAGCTCGAGGAAGATCCTTTAAGTGTGGCTAAACTTTCTTTGGAGCAAGGCATTTTGTTGTATAAAGGCCGGTTA
GTTTTGTCCAAAACCTCATCCATTATTCTGGCCTTAGTAACCACTTTCCATGATTTGGTATTAGGAGGACATTACGGGTTCTTATGCACATATAAAAGGATGGCT
GGGGAGCTTCGTTGGAAAGGAATGAAAGAGGATGTCAAGAAGCATGTAGCGAAATGTGACAACTGCCAAAAGAACAAGAGTATACCGGATAGTGTGGGAGGATAT
ATCCATGGACATTGTGGAGAGGTTACCCCAGTCAAAAGAGTATAA

mRNA sequence

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Protein sequence

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MHYLGLKGFLGLTGYYRRFVKDYGAVAAPLTQLLHKDAFKWSNQTTEAFNALKSGDHICWGKFTVISDQNALKFMLKQREVQPQFQRWRTKLMGYDFEIFYQPKS
NKAADALSRMPPNAELITLVAPSLLDVHKIQQEVREDVQLQKVPQKLEEDPLSVAKLSLEQGILLYKGRLVLSKTSSIILALVTTFHDLVLGGHYGFLCTYKRMA
GELRWKGMKEDVKKHVAKCDNCQKNKSIPDSVGGYIHGHCGEVTPVKRV

CmUC09G175100 (gene) of Watermelon (USVL531) v1 genome