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CmUC09G182500 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC09G182500
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptiongeneral transcription and DNA repair factor IIH subunit TFB1-1-like
Genome locationCmU531Chr09:37883535..37884459
RNA-Seq ExpressionCmUC09G182500
SyntenyCmUC09G182500
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059966.1 putative RNA polymerase II transcription factor B subunit 1-1 isoform X4 [Cucumis melo var. makuwa]8.9e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
XP_008457278.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo]8.9e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
XP_016902111.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Cucumis melo]8.9e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
XP_016902113.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 [Cucumis melo]8.9e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
XP_038894195.1 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X3 [Benincasa hispida]8.9e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
TrEMBL top hitse value%identityAlignment
A0A1S3C6E8 probable RNA polymerase II transcription factor B subunit 1-1 isoform X14.3e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
A0A1S4E1K9 probable RNA polymerase II transcription factor B subunit 1-1 isoform X24.3e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
A0A1S4E1L0 probable RNA polymerase II transcription factor B subunit 1-1 isoform X34.3e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
A0A1S4E1L2 probable RNA polymerase II transcription factor B subunit 1-1 isoform X44.3e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
A0A5D3BDZ8 Putative RNA polymerase II transcription factor B subunit 1-1 isoform X44.3e-1783.93Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
        Y    EIKET +AD+RHQVSLLVRPMHQALDAAFQHHDADLQKRSVK GER NGYT
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT
SwissProt top hitse value%identityAlignment
Q3ECP0 General transcription and DNA repair factor IIH subunit TFB1-14.0e-1261.82Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGY
        Y+    +KE+  +D RHQVSLLVRPM QALDAAF H++ DLQ+R+ K GER NGY
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGY
Q9M322 General transcription and DNA repair factor IIH subunit TFB1-33.2e-0960.42Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKI
        Y+    +K++  +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+ KI
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKI
Arabidopsis top hitse value%identityAlignment
AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)2.8e-1361.82Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGY
        Y+    +KE+  +D RHQVSLLVRPM QALDAAF H++ DLQ+R+ K GER NGY
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGY
AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)2.3e-1060.42Show/hide
Query:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKI
        Y+    +K++  +D RHQVSLLVRPM QALDAAFQH+++DLQ+R+ KI
Subjt:  YTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATGGAAGCTCGTATTGAAGTTAAGAAGACTCGTTTGTAAGGGAGTTGTTGACAGCCATGGTTCTTCCTCTCGAGAGTGTCAACTTATATTAAATGGTTCATACTG
GGCATATACTGCATTTTTGGAGATTAAGGAAACTTGGCTAGCAGATTACCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCATTTCAGC
ATCATGACGCTGACTTGCAGAAGAGATCAGTAAAGATTGGGGAAAGGGCCAACGGATACACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATGGAAGCTCGTATTGAAGTTAAGAAGACTCGTTTGTAAGGGAGTTGTTGACAGCCATGGTTCTTCCTCTCGAGAGTGTCAACTTATATTAAATGGTTCATACTG
GGCATATACTGCATTTTTGGAGATTAAGGAAACTTGGCTAGCAGATTACCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCATCAGGCTCTGGATGCTGCATTTCAGC
ATCATGACGCTGACTTGCAGAAGAGATCAGTAAAGATTGGGGAAAGGGCCAACGGATACACTTAG
Protein sequenceShow/hide protein sequence
MSWKLVLKLRRLVCKGVVDSHGSSSRECQLILNGSYWAYTAFLEIKETWLADYRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKIGERANGYT