; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC10G190740 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC10G190740
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCmU531Chr10:18863095..18863553
RNA-Seq ExpressionCmUC10G190740
SyntenyCmUC10G190740
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AQY61295.1 Pol [Coffea arabica]3.2e-5675Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLD  KD FRPR+ NEE+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP+K RSQTGYLFTYG TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

AQY61300.1 Pol [Coffea eugenioides]9.2e-5674.34Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLD  KD FRPR+ NEE+L PE+ YLSAI  LMYLAN TRPDI+F VNLLAR+SSS T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP+K RSQTGYLFTYG TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

KAA0038947.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-6382.89Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YL+AI ALMYLANNTRPDI+F VNLLARYSSS TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP K RSQTGYLFT G TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

KAA0067250.1 Pol [Cucumis melo var. makuwa]8.6e-6282.24Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALM LANNTRPDIAF VNLLARYSSS TKRHWN +KH+L YLRG+I++ LFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP K RSQ GYLFT+G TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

TYK21506.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.0e-6282.24Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALMYLANNTRPDIAF VNLLARYS S TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         +LSDP+K RSQTGYLFT   TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

TrEMBL top hitse value%identityAlignment
A0A1U9WYD5 Pol4.4e-5674.34Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLD  KD FRPR+ N+E+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP+K RSQTGYLFTYG TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

A0A1U9WYE0 Pol1.5e-5675Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLD  KD FRPR+ NEE+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP+K RSQTGYLFTYG TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

A0A5D3CGU0 Retrovirus-related Pol polyprotein from transposon TNT 1-947.6e-6482.89Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YL+AI ALMYLANNTRPDI+F VNLLARYSSS TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP K RSQTGYLFT G TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

A0A5D3CKU4 Pol4.2e-6282.24Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALM LANNTRPDIAF VNLLARYSSS TKRHWN +KH+L YLRG+I++ LFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         YLSDP K RSQ GYLFT+G TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

A0A5D3DD63 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-6282.24Show/hide
Query:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS
        M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALMYLANNTRPDIAF VNLLARYS S TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+
Subjt:  MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADS

Query:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE
         +LSDP+K RSQTGYLFT   TAISWRSVKQT+TATSSNHAEILAIHE SRE
Subjt:  RYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.8e-1537.6Show/hide
Query:  SAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFD--LVGYADSRYLSDPYKTRSQTGYLF-TYGETAISWR
        S I  LMY+   TRPD+   VN+L+RYSS      W  +K +L YL+G+I++ L +     F+  ++GY DS +       +S TGYLF  +    I W 
Subjt:  SAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFD--LVGYADSRYLSDPYKTRSQTGYLF-TYGETAISWR

Query:  SVKQTITATSSNHAEILAIHETSRE
        + +Q   A SS  AE +A+ E  RE
Subjt:  SVKQTITATSSNHAEILAIHETSRE

P0CV72 Secreted RxLR effector protein 1615.5e-1938.89Show/hide
Query:  ISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISW
        + YLSA+ A+MYL   TRPD+A  V +L++++S     HW  +K +L YL+ +   GL ++      LVGY+D+ +  D    RS +GYLF      +SW
Subjt:  ISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISW

Query:  RSVKQTITATSSNHAEILAIHETSRE
        RS KQ   A SS   E +A+ E ++E
Subjt:  RSVKQTITATSSNHAEILAIHETSRE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-1740.94Show/hide
Query:  EISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAIS
        ++ Y SA+ +LMY    TRPDIA  V +++R+  +  K HW  +K IL YLRG+    L +   S+  L GY D+    D    +S TGYLFT+   AIS
Subjt:  EISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAIS

Query:  WRSVKQTITATSSNHAEILAIHETSRE
        W+S  Q   A S+  AE +A  ET +E
Subjt:  WRSVKQTITATSSNHAEILAIHETSRE

P92519 Uncharacterized mitochondrial protein AtMg008103.9e-0930.65Show/hide
Query:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS
        + S + AL YL   TRPDI++ VN++ +     T   ++++K +L Y++G+I  GL+    S  ++  + DS +       RS TG+    G   ISW +
Subjt:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS

Query:  VKQTITATSSNHAEILAIHETSRE
         +Q   + SS   E  A+  T+ E
Subjt:  VKQTITATSSNHAEILAIHETSRE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.5e-1336.29Show/hide
Query:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS
        Y   + +L YLA  TRPD+++ VN L++Y    T  HWN +K +L YL G+ + G+F    +   L  Y+D+ +  D     S  GY+   G   ISW S
Subjt:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS

Query:  VKQTITATSSNHAEILAIHETSRE
         KQ     SS  AE  ++  TS E
Subjt:  VKQTITATSSNHAEILAIHETSRE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.2e-1436.97Show/hide
Query:  SYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWR
        +Y   I  LMYL   TR DI+F VN L+++S +    H   +  IL Y++G++  GLFYS+++   L  ++D+ + S     RS  GY    G + ISW+
Subjt:  SYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWR

Query:  SVKQTITATSSNHAEILAI
        S KQ + + SS  AE  A+
Subjt:  SVKQTITATSSNHAEILAI

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.1e-0940.51Show/hide
Query:  MYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGY
        MYL   TRPD+ F VN L+++SS+        +  +L Y++G++  GLFYS  S+  L  +ADS + S P   RS TG+
Subjt:  MYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGY

ATMG00810.1 DNA/RNA polymerases superfamily protein2.8e-1030.65Show/hide
Query:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS
        + S + AL YL   TRPDI++ VN++ +     T   ++++K +L Y++G+I  GL+    S  ++  + DS +       RS TG+    G   ISW +
Subjt:  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRS

Query:  VKQTITATSSNHAEILAIHETSRE
         +Q   + SS   E  A+  T+ E
Subjt:  VKQTITATSSNHAEILAIHETSRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGCCCTCGAGATAATAATGAAGAACTTCTTAGTCCTGAAATATCATATCTTAGTGCAATTGATGCACTTAT
GTATCTTGCTAATAATACAAGACCAGATATTGCATTTTTAGTAAATTTATTAGCTAGATATAGTTCTTCTCTAACAAAAAGACATTGGAATATAATTAAGCATATACTCT
GTTATCTCCGAGGATCGATCAATGTGGGTTTGTTTTATTCAAATAAATCAAATTTTGACTTAGTTGGTTATGCAGATTCTAGATATTTATCTGATCCATACAAAACTAGA
TCTCAAACAGGTTATCTGTTCACATATGGAGAAACTGCTATATCCTGGCGATCAGTGAAACAAACCATAACAGCGACTTCCTCAAATCATGCTGAAATTCTTGCAATCCA
TGAAACTAGTAGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGCCCTCGAGATAATAATGAAGAACTTCTTAGTCCTGAAATATCATATCTTAGTGCAATTGATGCACTTAT
GTATCTTGCTAATAATACAAGACCAGATATTGCATTTTTAGTAAATTTATTAGCTAGATATAGTTCTTCTCTAACAAAAAGACATTGGAATATAATTAAGCATATACTCT
GTTATCTCCGAGGATCGATCAATGTGGGTTTGTTTTATTCAAATAAATCAAATTTTGACTTAGTTGGTTATGCAGATTCTAGATATTTATCTGATCCATACAAAACTAGA
TCTCAAACAGGTTATCTGTTCACATATGGAGAAACTGCTATATCCTGGCGATCAGTGAAACAAACCATAACAGCGACTTCCTCAAATCATGCTGAAATTCTTGCAATCCA
TGAAACTAGTAGAGAATGA
Protein sequenceShow/hide protein sequence
MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTR
SQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE